Classification of breast cancer using microarray gene expression data: A survey

被引:35
|
作者
Abd-Elnaby, Muhammed [1 ]
Alfonse, Marco [1 ]
Roushdy, Mohamed [2 ]
机构
[1] Ain Shams Univ, Fac Comp & Informat Sci, Cairo, Egypt
[2] Future Univ, Fac Comp & Informat Technol, New Cairo, Egypt
关键词
Feature selection; Machine learning; Cancer classification; Microarray data;
D O I
10.1016/j.jbi.2021.103764
中图分类号
TP39 [计算机的应用];
学科分类号
081203 ; 0835 ;
摘要
Cancer, in particular breast cancer, is considered one of the most common causes of death worldwide according to the world health organization. For this reason, extensive research efforts have been done in the area of accurate and early diagnosis of cancer in order to increase the likelihood of cure. Among the available tools for diagnosing cancer, microarray technology has been proven to be effective. Microarray technology analyzes the expression level of thousands of genes simultaneously. Although the huge number of features or genes in the microarray data may seem advantageous, many of these features are irrelevant or redundant resulting in the deterioration of classification accuracy. To overcome this challenge, feature selection techniques are a mandatory preprocessing step before the classification process. In the paper, the main feature selection and classification techniques introduced in the literature for cancer (particularly breast cancer) are reviewed to improve the microarray-based classification.
引用
收藏
页数:9
相关论文
共 50 条
  • [31] An investigation of gene expression in human breast cancer using tissue microarray
    Gabrovska, P.
    Smith, R.
    Griffiths, L.
    BREAST, 2008, 17 (02): : 208 - 209
  • [32] A STUDY ON GENE SELECTION AND CLASSIFICATION ALGORITHMS FOR CLASSIFICATION OF MICROARRAY GENE EXPRESSION DATA
    Chin, Yeo Lee
    Deris, Safaai
    JURNAL TEKNOLOGI, 2005, 43
  • [33] Classification of microarray data using gene networks
    Franck Rapaport
    Andrei Zinovyev
    Marie Dutreix
    Emmanuel Barillot
    Jean-Philippe Vert
    BMC Bioinformatics, 8
  • [34] Classification of microarray data using gene networks
    Rapaport, Franck
    Zinovyev, Andrei
    Dutreix, Marie
    Barillot, Emmanuel
    Vert, Jean-Philippe
    BMC BIOINFORMATICS, 2007, 8 (1)
  • [35] An efficient approach for classification of gene expression microarray data
    Sreepada, Rama Syamala
    Vipsita, Swati
    Mohapatra, Puspanjali
    2014 FOURTH INTERNATIONAL CONFERENCE OF EMERGING APPLICATIONS OF INFORMATION TECHNOLOGY (EAIT), 2014, : 344 - 348
  • [36] Dimension reduction for classification with gene expression microarray data
    Dai, Jian J.
    Lieu, Linh
    Rocke, David
    STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2006, 5
  • [37] Tumor classification by partial least squares using microarray gene expression data
    Nguyen, DV
    Rocke, DM
    BIOINFORMATICS, 2002, 18 (01) : 39 - 50
  • [38] Gene Selection for Cancer Classification from Microarray Data Using Data Overlap Measure
    Sarbazi-Azad, Saeed
    Abadeh, Mohammad Saniee
    2018 25TH IRANIAN CONFERENCE ON BIOMEDICAL ENGINEERING AND 2018 3RD INTERNATIONAL IRANIAN CONFERENCE ON BIOMEDICAL ENGINEERING (ICBME), 2018, : 257 - 262
  • [39] A Hybrid Approach for Biomarker Discovery from Microarray Gene Expression Data for Cancer Classification
    Peng, Yanxiong
    Li, Wenyuan
    Liu, Ying
    CANCER INFORMATICS, 2006, 2 : 301 - 311
  • [40] Gene subset selection in microarray data using entropic filtering for cancer classification
    Navarro, Felix F. Gonzalez
    Munoz, Lluis A. Belanche
    EXPERT SYSTEMS, 2009, 26 (01) : 113 - 124