Molecular docking, ADMET analysis, and bioactivity studies of phytochemicals from Phyllanthus niruri as potential inhibitors of hepatitis C virus NSB5 polymerase

被引:13
|
作者
Adedotun, Ibrahim Olaide [1 ]
Abdul-Hammed, Misbaudeen [1 ]
Hamzat, Baliqis Adeola [1 ]
Adepoju, Adewusi John [1 ]
Akinboade, Modinat Wuraola [2 ]
Afolabi, Tolulope Irapada [1 ]
Ismail, Ubeydat Temitope [1 ]
机构
[1] Ladoke Akintola Univ Technol, Dept Pure & Appl Chem, Computat & Biophys Chem Lab, PMB 4000, Ogbomosho, Nigeria
[2] Ladoke Akintola Univ Technol, Dept Biochem, PMB 4000, Ogbomosho, Nigeria
关键词
ADMET; Phyllantus niruri; Hepatitis C Virus; Molecular docking; Drug-likeness; Bioactivities; TEA;
D O I
10.1016/j.jics.2021.100321
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Out of the liver complications, hepatitis C has been reported to be treated with antiviral medications which are quite expensive and have severe side effects on health. Therefore, the main target of this work is to search for a safer and effective remedy for hepatitis C from the reservoir of phytochemicals present in Phyllanthus niruri via insilico studies. Reported phytochemicals isolated from Phyllanthus niruri were subjected to molecular docking simulation using PyRx docking tool, PyMol, and Biovia 2019 for visualization against Hepatitis C virus (HCV) NSB5 polymerase. However, the docking scores with all the other necessary analyses like drug-likeness, and ADMET profiling, furnished only three of the screened ligands as very potent potential drug candidates as compared to the standard drug of HCV, mericitabine(-8.1 kcal/mol). Therefore, cyanidine (-8.7 kcal/mol), lupeol(-8.5 kcal/mol), phloretin-2-O-beta glucoside (-8.3 kcal/mol) with excellent drug-likeness, and ADMET properties are hereby recommended for further in vivo animal studies and clinical trials towards the development of new therapeutic agent for Hepatitis C Virus treatment and management.
引用
收藏
页数:8
相关论文
共 50 条
  • [31] Comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) of thiazolone derivatives as hepatitis C virus NS5B polymerase allosteric inhibitors
    Lei, Beilei
    Du, Juan
    Li, Shuyan
    Liu, Huanxiang
    Ren, Yueying
    Yao, Xiaojun
    JOURNAL OF COMPUTER-AIDED MOLECULAR DESIGN, 2008, 22 (10) : 711 - 725
  • [32] Design, synthesis, assessment, and molecular docking of novel pyrrolopyrimidine (7-deazapurine) derivatives as non-nucleoside hepatitis C virus NS5B polymerase inhibitors
    Mohamed, Mosaad S.
    Sayed, Amira I.
    Khedr, Mohammed A.
    Soror, Sameh H.
    BIOORGANIC & MEDICINAL CHEMISTRY, 2016, 24 (09) : 2146 - 2157
  • [33] Syntheses of nucleosides with 2′-spirolactam and 2′-spiropyrrolidine moieties as potential inhibitors of hepatitis C virus NS5B polymerase
    Dang, Qun
    Zhang, Zhibo
    Tang, Bingyu
    Song, Yang
    Wu, Ling
    Chen, Tongqian
    Bogen, Stephane
    Girijavallabhan, Vinay
    Olsen, David B.
    Meinke, Peter T.
    TETRAHEDRON LETTERS, 2014, 55 (28) : 3813 - 3816
  • [34] Insight into the Structural Requirements of Benzothiadiazine Scaffold-Based Derivatives as Hepatitis C Virus NS5B Polymerase Inhibitors Using 3D-QSAR, Molecular Docking and Molecular Dynamics
    Zhang, H-X.
    Li, Y.
    Wang, X.
    Xiao, Z-T.
    Wang, Y-H.
    CURRENT MEDICINAL CHEMISTRY, 2011, 18 (26) : 4019 - 4028
  • [35] In Silico Identification of Potential Inhibitors for Dengue Virus NS5 Methyltransferase: Molecular Docking, Dynamics, DFT, and ADME Analysis
    Das, Bhanuranjan
    Pal, Purna Chandra
    Upadhyay, Anjali A.
    CHEMISTRYSELECT, 2025, 10 (08):
  • [36] Discovery of Novel Hepatitis C Virus NS5B Polymerase Inhibitors by Combining Random Forest, Multiple e-Pharmacophore Modeling and Docking
    Wei, Yu
    Li, Jinlong
    Qing, Jie
    Huang, Mingjie
    Wu, Ming
    Gao, Fenghua
    Li, Dongmei
    Hong, Zhangyong
    Kong, Lingbao
    Huang, Weiqiang
    Lin, Jianping
    PLOS ONE, 2016, 11 (02):
  • [37] Identification of phytochemicals from Eclipta alba and assess their potentiality against Hepatitis C virus envelope glycoprotein: virtual screening, docking, and molecular dynamics simulation study
    Moharana, Maheswata
    Pattanayak, Subrat Kumar
    Khan, Fahmida
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2023, 41 (11): : 5328 - 5344
  • [38] In Silico Molecular Docking and Molecular Dynamic Simulation Analysis of Phytochemicals From Indian Foods as Potential Inhibitors of SARS-CoV-2 RdRp and 3CLpro
    Qazi, Sahar
    Das, Soumi
    Khuntia, Bharat Krushna
    Sharma, Vandna
    Sharma, Shruti
    Sharma, Gautam
    Raza, Khalid
    NATURAL PRODUCT COMMUNICATIONS, 2021, 16 (09)
  • [39] Structure-Based Virtual Screening of Potential Inhibitors Targeting the Prolyl-tRNA Synthetase (PRS) in Eimeria tenella: Insights from Molecular Docking, ADMET Studies, and Molecular Dynamics Simulations
    Cai, Haiming
    Liao, Shenquan
    Li, Juan
    Lv, Minna
    Lin, Xuhui
    Song, Yongle
    Chen, Xiangjie
    Zhu, Yibin
    Zhang, Jianfei
    Qi, Nanshan
    Sun, Mingfei
    MOLECULES, 2025, 30 (04):
  • [40] Anti-hepatitis-C virus activity and QSAR study of certain thiazolidinone and thiazolotriazine derivatives as potential NS5B polymerase inhibitors
    Hassan, Ghaneya S.
    Georgey, Hanan H.
    Mohammed, Esraa Z.
    Omar, Farghaly A.
    EUROPEAN JOURNAL OF MEDICINAL CHEMISTRY, 2019, 184