Identification of phytochemicals from Eclipta alba and assess their potentiality against Hepatitis C virus envelope glycoprotein: virtual screening, docking, and molecular dynamics simulation study

被引:19
|
作者
Moharana, Maheswata [1 ]
Pattanayak, Subrat Kumar [1 ]
Khan, Fahmida [1 ]
机构
[1] Natl Inst Technol, Dept Chem, Raipur, Madhya Pradesh, India
来源
关键词
Hepatitis C; E2; glycoprotein; Eclipta alba; docking; molecular dynamics simulation; FORCE-FIELD; PROTEIN; CONSTITUENTS; PROSTRATA; MUTATION; BINDING; CELLS; PLANT; WATER;
D O I
10.1080/07391102.2022.2085804
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Hepatitis C virus has a major role in spreading chronic liver disease and hepatocellular carcinoma. Factors such as high costs, pharmacological side effects, and the development of drug resistance strains require the development of new and potentially effective antiviral to treat the various stages of Hepatitis C. Bioactive chemicals have been extracted from medicinal plants and are utilized by humans for the goal of maintaining a healthy lifestyle. The goal of this work is to recognize phytochemicals from Eclipta alba and assess their potentiality activity against the hepatitis C virus envelope glycoprotein using in silico approaches. Phytochemicals from Eclipta alba were virtually screened by Auto dock raccoon and 12 compounds were selected for molecular docking to probe the active binding site. The top two compounds based on the binding score like ecliptalbine and oleanolic acid with HCV E2 glycoprotein exhibit binding energy -8.88 and -8.02 kcal/mol, respectively. The chemicals' usefulness was reinforced by positive pharmacokinetic data. The phytocompounds were identified as potent HCV inhibitors based on the drug likeness and ADMET properties. Both ecliptalbine and oleanolic acid underwent molecular dynamics simulations to determine features such as RMSD, RMSF, SASA, hydrogen-bond number, and MM-PBSA-based binding free energy. From the molecular docking and molecular dynamics simulation study revealed that oleanolic acid obtained from Eclipta alba can be used as inhibitors against Hepatitis C. The identified inhibitor from our study will be study in vitro and in vivo studies to check their efficacy against Hepatitis C. Communicated by Ramaswamy H. Sarma
引用
收藏
页码:5328 / 5344
页数:17
相关论文
共 25 条
  • [1] Identification and evaluation of anti Hepatitis C virus phytochemicals from Eclipta alba
    Manvar, Dinesh
    Mishra, Mahesh
    Kumar, Suriender
    Pandey, Virendra N.
    JOURNAL OF ETHNOPHARMACOLOGY, 2012, 144 (03) : 545 - 554
  • [2] Screening and molecular docking of selected phytochemicals against NS5B polymerase of hepatitis c virus
    Mustafa, Ghulam
    Majid, Muhammad
    Ghaffar, Abdul
    Yameen, Muhammad
    Samad, Hafiz Abdul
    Mahrosh, Hafiza Salaha
    PAKISTAN JOURNAL OF PHARMACEUTICAL SCIENCES, 2020, 33 (05) : 2317 - 2322
  • [3] Virtual screening of eighteen million compounds against dengue virus: Combined molecular docking and molecular dynamics simulations study
    Mirza, Shaher Bano
    Salmas, Ramin Ekhteiari
    Fatmi, M. Qaiser
    Durdagi, Serdar
    JOURNAL OF MOLECULAR GRAPHICS & MODELLING, 2016, 66 : 99 - 107
  • [4] Identification of novel protein kinase C-βII inhibitors: virtual screening, molecular docking and molecular dynamics simulation studies
    Bharat Kumar Reddy Sanapalli
    Vidyasrilekha Yele
    Lalji Baldaniya
    Veera Venkata Satyanarayana Reddy Karri
    Journal of Molecular Modeling, 2022, 28
  • [5] Identification of novel protein kinase C-βII inhibitors: virtual screening, molecular docking and molecular dynamics simulation studies
    Sanapalli, Bharat Kumar Reddy
    Yele, Vidyasrilekha
    Baldaniya, Lalji
    Karri, Veera Venkata Satyanarayana Reddy
    JOURNAL OF MOLECULAR MODELING, 2022, 28 (05)
  • [6] Effect of temperature on hepatitis a virus and exploration of binding mode mechanism of phytochemicals from tinospora cordifolia: an insight into molecular docking, MM/GBSA, and molecular dynamics simulation study
    Moharana, Maheswata
    Maharana, Prakash Chandra
    Pattanayak, Subrat Kumar
    Khan, Fahmida
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (02): : 598 - 614
  • [7] Identification of potential DNA gyrase inhibitors: virtual screening, extra-precision docking and molecular dynamics simulation study
    Kumar, Avinash
    Prasun, Chakrawarti
    Rathi, Ekta
    Nair, Maya S.
    Kini, Suvarna G.
    CHEMICAL PAPERS, 2023, 77 (11) : 6717 - 6727
  • [8] Identification of potential DNA gyrase inhibitors: virtual screening, extra-precision docking and molecular dynamics simulation study
    Avinash Kumar
    Chakrawarti Prasun
    Ekta Rathi
    Maya S. Nair
    Suvarna G. Kini
    Chemical Papers, 2023, 77 : 6717 - 6727
  • [9] Repurposing of drug candidates against Epstein-Barr virus: Virtual screening, docking computations, molecular dynamics, and quantum mechanical study
    Ibrahim, Mahmoud A. A.
    Hassan, Alaa M. A.
    Mohamed, Eslam A. R.
    Mekhemer, Gamal A. H.
    Sidhom, Peter A.
    El-Tayeb, Mohamed A.
    Khan, Shahzeb
    Shoeib, Tamer
    Soliman, Mahmoud E. S.
    Abdelrahman, Alaa H. M.
    PLOS ONE, 2024, 19 (11):
  • [10] Identification of novel potential hepatitis E virus inhibitors as seen from molecular docking, free energy landscape and molecular dynamics simulation studies
    Moharana, Maheswata
    Pattanayak, Subrat Kumar
    Khan, Fahmida
    MOLECULAR SIMULATION, 2023, 49 (10) : 967 - 981