Molecular docking, ADMET analysis, and bioactivity studies of phytochemicals from Phyllanthus niruri as potential inhibitors of hepatitis C virus NSB5 polymerase

被引:13
|
作者
Adedotun, Ibrahim Olaide [1 ]
Abdul-Hammed, Misbaudeen [1 ]
Hamzat, Baliqis Adeola [1 ]
Adepoju, Adewusi John [1 ]
Akinboade, Modinat Wuraola [2 ]
Afolabi, Tolulope Irapada [1 ]
Ismail, Ubeydat Temitope [1 ]
机构
[1] Ladoke Akintola Univ Technol, Dept Pure & Appl Chem, Computat & Biophys Chem Lab, PMB 4000, Ogbomosho, Nigeria
[2] Ladoke Akintola Univ Technol, Dept Biochem, PMB 4000, Ogbomosho, Nigeria
关键词
ADMET; Phyllantus niruri; Hepatitis C Virus; Molecular docking; Drug-likeness; Bioactivities; TEA;
D O I
10.1016/j.jics.2021.100321
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Out of the liver complications, hepatitis C has been reported to be treated with antiviral medications which are quite expensive and have severe side effects on health. Therefore, the main target of this work is to search for a safer and effective remedy for hepatitis C from the reservoir of phytochemicals present in Phyllanthus niruri via insilico studies. Reported phytochemicals isolated from Phyllanthus niruri were subjected to molecular docking simulation using PyRx docking tool, PyMol, and Biovia 2019 for visualization against Hepatitis C virus (HCV) NSB5 polymerase. However, the docking scores with all the other necessary analyses like drug-likeness, and ADMET profiling, furnished only three of the screened ligands as very potent potential drug candidates as compared to the standard drug of HCV, mericitabine(-8.1 kcal/mol). Therefore, cyanidine (-8.7 kcal/mol), lupeol(-8.5 kcal/mol), phloretin-2-O-beta glucoside (-8.3 kcal/mol) with excellent drug-likeness, and ADMET properties are hereby recommended for further in vivo animal studies and clinical trials towards the development of new therapeutic agent for Hepatitis C Virus treatment and management.
引用
收藏
页数:8
相关论文
共 50 条
  • [21] Virtual screening of imidazole analogs as potential hepatitis C virus NS5B polymerase inhibitors
    Patil, Vaishali M.
    Gupta, Satya P.
    Samanta, Subeer
    Masand, Neeraj
    CHEMICAL PAPERS, 2013, 67 (02): : 236 - 244
  • [22] Virtual screening of imidazole analogs as potential hepatitis C virus NS5B polymerase inhibitors
    Vaishali M. Patil
    Satya P. Gupta
    Subeer Samanta
    Neeraj Masand
    Chemical Papers, 2013, 67 : 236 - 244
  • [23] Metabolite profiling of green algae Halimeda opuntia to target hepatitis C virus-796 polymerase inhibitors assisted by molecular docking
    Abdel-Rahman, Iman A. M.
    Attia, Eman Zekry
    Aly, Omar M.
    Saber, Hani
    Rushdi, Mohammed I.
    Abdelmohsen, Usama Ramadan
    SOUTH AFRICAN JOURNAL OF BOTANY, 2022, 151 : 538 - 543
  • [24] Computational Analysis of De Novo Evolution of Hepatitis C Virus NS5B Polymerase Inhibitors
    Chen, Po-Yuan
    Hsu, Wei-Tse
    Jhuo, Mien-De
    Ou, Che-Yen
    Cheng, Tzu-Hurng
    Shih, Tzu-Ching
    Wu, Chieh-Hsi
    Wu, Rick Sai-Chuan
    Hsia, Te-Chun
    Chung, Jing-Gung
    IN VIVO, 2011, 25 (02): : 219 - 228
  • [25] Molecular docking studies of phytochemicals from Terminalia chebula for identification of potential multi-target inhibitors of SARS-CoV-2
    Sarkar, Arkaniva
    Agarwal, Rushali
    Bandyopadhyay, Boudhayan
    JOURNAL OF AYURVEDA AND INTEGRATIVE MEDICINE, 2022, 13 (02)
  • [26] Syntheses of nucleosides with a 1′,2′-β-lactam moiety as potential inhibitors of hepatitis C virus NS5B polymerase
    Dang, Qun
    Zhang, Zhibo
    Bai, Yunfeng
    Sun, Ruijun
    Yin, Jie
    Chen, Tongqian
    Bogen, Stephane
    Girijavallabhan, Vinay
    Olsen, David B.
    Meinke, Peter T.
    TETRAHEDRON LETTERS, 2014, 55 (40) : 5576 - 5579
  • [27] In Depth in Silico Exploration of Some Natural Indole Alkaloids as Potential Plasmepsin II Inhibitors: ADMET Calculations, Molecular Docking Analysis, Molecular Dynamics Simulation, and DFT Studies
    Reddy, Konatham Teja Kumar
    Arjun, Uppuluri Varuna Naga Venkata
    Alhmoud, Jehad F.
    Reddy, S. Mounika
    Dhillishree, D.
    Tambe, Vishal B.
    Shinde, Ganesh S.
    Shanmugarajan, Thukani Sathanantham
    Dharmamoorthy, G.
    Gobalakriahnan, P.
    CHEMICAL METHODOLOGIES, 2025, 9 (04): : 277 - 300
  • [28] Identification of potential human pancreatic α-amylase inhibitors from natural products by molecular docking, MM/GBSA calculations, MD simulations, and ADMET analysis
    Basnet, Santosh
    Ghimire, Madhav Prasad
    Lamichhane, Tika Ram
    Adhikari, Rajendra
    Adhikari, Achyut
    PLOS ONE, 2023, 18 (03):
  • [29] In silico approach towards the identification of potential inhibitors from Curcuma amada Roxb against H. pylori: ADMET screening and molecular docking studies
    Divyashri, G.
    Murthy, P. Krishna
    Sundareshan, Subramaniam
    Kamath, Pavan
    Murahari, Manikanta
    Saraswathy, G. R.
    Sadanandan, Bindu
    BIOIMPACTS, 2021, 11 (02) : 119 - 127
  • [30] Comparative molecular field analysis (CoMFA) and comparative molecular similarity indices analysis (CoMSIA) of thiazolone derivatives as hepatitis C virus NS5B polymerase allosteric inhibitors
    Beilei Lei
    Juan Du
    Shuyan Li
    Huanxiang Liu
    Yueying Ren
    Xiaojun Yao
    Journal of Computer-Aided Molecular Design, 2008, 22 : 711 - 725