A General Solution of the Wright-Fisher Model of Random Genetic Drift

被引:4
|
作者
Tat Dat Tran [1 ]
Hofrichter, Julian [1 ]
Jost, Juergen [1 ,2 ,3 ]
机构
[1] Max Planck Inst Math Sci, D-04103 Leipzig, Germany
[2] Univ Leipzig, Dept Math, D-04081 Leipzig, Germany
[3] Santa Fe Inst Sci Complex, Santa Fe, NM 87501 USA
基金
芬兰科学院; 欧洲研究理事会;
关键词
Random genetic drift; Fokker-Planck equation; Wright-Fisher model; Several alleles; DIFFUSION APPROXIMATIONS;
D O I
10.1007/s12591-016-0289-7
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
We introduce a general solution concept for the Fokker-Planck (Kolmogorov) equation representing the diffusion limit of the Wright-Fisher model of random genetic drift for an arbitrary number of alleles at a single locus. This solution will continue beyond the transitions from the loss of alleles, that is, it will naturally extend to the boundary strata of the probability simplex on which the diffusion is defined. This also takes care of the degeneracy of the diffusion operator at the boundary. We shall then show the existence and uniqueness of a solution. From this solution, we can readily deduce information about the evolution of a Wright-Fisher population.
引用
收藏
页码:467 / 492
页数:26
相关论文
共 50 条
  • [31] On Wright-Fisher diffusion and its relatives
    Huillet, Thierry
    JOURNAL OF STATISTICAL MECHANICS-THEORY AND EXPERIMENT, 2007,
  • [32] The stationary distribution of a sample from the Wright-Fisher diffusion model with general small mutation rates
    Burden, Conrad J.
    Griffiths, Robert C.
    JOURNAL OF MATHEMATICAL BIOLOGY, 2019, 78 (04) : 1211 - 1224
  • [33] An introduction to the mathematical structure of the Wright-Fisher model of population genetics
    Tat Dat Tran
    Hofrichter, Julian
    Jost, Juergen
    THEORY IN BIOSCIENCES, 2013, 132 (02) : 73 - 82
  • [34] The distribution of the quasispecies for the Wright-Fisher model on the sharp peak landscape
    Dalmau, Joseba
    STOCHASTIC PROCESSES AND THEIR APPLICATIONS, 2015, 125 (01) : 272 - 293
  • [35] The origins of the stochastic theory of population genetics: The Wright-Fisher model
    Ishida, Yoichi
    Rosales, Alirio
    STUDIES IN HISTORY AND PHILOSOPHY OF SCIENCE PART C-STUDIES IN HISTORY AND PHILOSOPHY OF BIOLOGICAL AND BIOMEDICAL SCIENCES, 2020, 79
  • [36] An exact sampling formula for the Wright-Fisher model and a solution to a conjecture about the finite-island model
    Lessard, Sabin
    GENETICS, 2007, 177 (02) : 1249 - 1254
  • [37] Bridging Wright-Fisher and Moran models
    Alexandre, Arthur
    Abbara, Alia
    Fruet, Cecilia
    Loverdo, Claude
    Bitbol, Anne-Florence
    JOURNAL OF THEORETICAL BIOLOGY, 2025, 599
  • [38] Filtering coupled Wright-Fisher diffusions
    Boetti, Chiara
    Ruggiero, Matteo
    JOURNAL OF MATHEMATICAL BIOLOGY, 2024, 89 (06)
  • [39] The free energy method and the Wright-Fisher model with 2 alleles
    Tat Dat Tran
    Hofrichter, Julian
    Jost, Juergen
    THEORY IN BIOSCIENCES, 2015, 134 (3-4) : 83 - 92
  • [40] A boundary preserving numerical algorithm for the Wright-Fisher model with mutation
    C. E. Dangerfield
    D. Kay
    S. MacNamara
    K. Burrage
    BIT Numerical Mathematics, 2012, 52 : 283 - 304