The Zebrafish Neurophenome Database (ZND): A Dynamic Open-Access Resource for Zebrafish Neurophenotypic Data

被引:13
|
作者
Kyzar, Evan [1 ,2 ]
Zapolsky, Ivan [1 ,2 ]
Green, Jeremy [1 ,2 ]
Gaikwad, Siddharth [1 ,2 ]
Pham, Mimi [1 ,2 ]
Collins, Christopher [1 ,2 ]
Roth, Andrew [1 ,2 ]
Stewart, Adam Michael [1 ,2 ]
St-Pierre, Paul [3 ,4 ]
Hirons, Budd [3 ,4 ]
Kalueff, Allan V. [1 ,2 ]
机构
[1] Tulane Univ, Sch Med, Dept Pharmacol, ZNRC, New Orleans, LA 70112 USA
[2] Tulane Univ, Sch Med, Neurosci Program, ZNRC, New Orleans, LA 70112 USA
[3] Tulane Innovat Learning Ctr, New Orleans, LA USA
[4] Howard Tilton Mem Lib, New Orleans, LA USA
关键词
ONLINE MENDELIAN INHERITANCE; INFORMATION NETWORK ZFIN; ANXIETY-LIKE BEHAVIOR; MODEL ORGANISM; ADULT ZEBRAFISH; DRUG DISCOVERY; GENOME PROJECT; HUMAN-DISEASE; OMICS DATA; KNOWLEDGEBASE;
D O I
10.1089/zeb.2011.0725
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Zebrafish (Danio rerio) are widely used in neuroscience research, where their utility as a model organism is rapidly expanding. Low cost, ease of experimental manipulations, and sufficient behavioral complexity make zebrafish a valuable tool for high-throughput studies in biomedicine. To complement the available repositories for zebrafish genetic information, there is a growing need for the collection of zebrafish neurobehavioral and neurological phenotypes. For this, we are establishing the Zebrafish Neurophenome Database (ZND; www.tulane.edu/similar to znpindex/similar to search) as a new dynamic online open-access data repository for behavioral and related physiological data. ZND, currently focusing on adult zebrafish, combines zebrafish neurophenotypic data with a simple, easily searchable user interface, which allow scientists to view and compare results obtained by other laboratories using various treatments in different testing paradigms. As a developing community effort, ZND is expected to foster innovative research using zebrafish by federating the growing body of zebrafish neurophenotypic data.
引用
收藏
页码:8 / 14
页数:7
相关论文
共 50 条
  • [41] Ginseng Genome Database: an open-access platform for genomics of Panax ginseng
    Murukarthick Jayakodi
    Beom-Soon Choi
    Sang-Choon Lee
    Nam-Hoon Kim
    Jee Young Park
    Woojong Jang
    Meiyappan Lakshmanan
    Shobhana V. G. Mohan
    Dong-Yup Lee
    Tae-Jin Yang
    BMC Plant Biology, 18
  • [42] Pofatu, a curated and open-access database for geochemical sourcing of archaeological materials
    Hermann, Aymeric
    Forkel, Robert
    McAlister, Andrew
    Cruickshank, Arden
    Golitko, Mark
    Kneebone, Brendan
    McCoy, Mark
    Reepmeyer, Christian
    Sheppard, Peter
    Sinton, John
    Weisler, Marshall
    SCIENTIFIC DATA, 2020, 7 (01)
  • [43] JASPAR:: an open-access database for eukaryotic transcription factor binding profiles
    Sandelin, A
    Alkema, W
    Engström, P
    Wasserman, WW
    Lenhard, B
    NUCLEIC ACIDS RESEARCH, 2004, 32 : D91 - D94
  • [44] Pofatu, a curated and open-access database for geochemical sourcing of archaeological materials
    Aymeric Hermann
    Robert Forkel
    Andrew McAlister
    Arden Cruickshank
    Mark Golitko
    Brendan Kneebone
    Mark McCoy
    Christian Reepmeyer
    Peter Sheppard
    John Sinton
    Marshall Weisler
    Scientific Data, 7
  • [45] The timing database: An open-access, live repository for interval timing studies
    Aydogan, Turac
    Karsilar, Hakan
    Duyan, Yalcin Akin
    Akdogan, Basak
    Baccarani, Alessia
    Brochard, Renaud
    De Corte, Benjamin
    Crystal, Jonathon D.
    Cavdaroglu, Bilgehan
    Gallistel, Charles Randy
    Grondin, Simon
    Gur, Ezgi
    Hallez, Quentin
    de Jong, Joost
    van Maanen, Leendert
    Matell, Matthew
    Narayanan, Nandakumar S.
    Ozoglu, Ezgi
    Oztel, Tutku
    Vatakis, Argiro
    Freestone, David
    Balci, Fuat
    BEHAVIOR RESEARCH METHODS, 2024, 56 (01) : 290 - 300
  • [46] Ginseng Genome Database: an open-access platform for genomics of Panax ginseng
    Jayakodi, Murukarthick
    Choi, Beom-Soon
    Lee, Sang-Choon
    Kim, Nam-Hoon
    Park, Jee Young
    Jang, Woojong
    Lakshmanan, Meiyappan
    Mohan, Shobhana V. G.
    Lee, Dong-Yup
    Yang, Tae-Jin
    BMC PLANT BIOLOGY, 2018, 18
  • [47] Pathogens-in-Foods (PIF): An open-access European database of occurrence data of biological hazards in foods
    Gonzales-Barron, Ursula
    Faria, Ana Sofia
    Thebault, Anne
    Guillier, Laurent
    Mendes, Lucas Ribeiro
    Silva, Lucas Ribeiro
    Messens, Winy
    Kooh, Pauline
    Cadavez, Vasco
    MICROBIAL RISK ANALYSIS, 2025, 29
  • [48] The timing database: An open-access, live repository for interval timing studies
    Turaç Aydoğan
    Hakan Karşılar
    Yalçın Akın Duyan
    Başak Akdoğan
    Alessia Baccarani
    Renaud Brochard
    Benjamin De Corte
    Jonathon D. Crystal
    Bilgehan Çavdaroğlu
    Charles Randy Gallistel
    Simon Grondin
    Ezgi Gür
    Quentin Hallez
    Joost de Jong
    Leendert van Maanen
    Matthew Matell
    Nandakumar S. Narayanan
    Ezgi Özoğlu
    Tutku Öztel
    Argiro Vatakis
    David Freestone
    Fuat Balcı
    Behavior Research Methods, 2024, 56 : 290 - 300
  • [49] MalarlmDB: an open-access literature-based malaria immunology database
    Deroost, Katrien
    Opdenakker, Ghislain
    Van den Steen, Philippe E.
    TRENDS IN PARASITOLOGY, 2014, 30 (06) : 309 - 316
  • [50] Mapping dynamic road emissions for a megacity by using open-access traffic congestion index data
    Wen, Yifan
    Zhang, Shaojun
    Zhang, Jingran
    Bao, Shuanghui
    Wu, Xiaomeng
    Yang, Daoyuan
    Wu, Ye
    APPLIED ENERGY, 2020, 260