Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides:: Quantification and application to antamanide

被引:88
|
作者
Detken, A
Hardy, EH
Ernst, M
Kainosho, M
Kawakami, T
Aimoto, S
Meier, BH [1 ]
机构
[1] ETH Honggerberg, Phys Chem Lab, CH-8093 Zurich, Switzerland
[2] Tokyo Metropolitan Univ, CREST, Japan Sci & Technol Corp, Hachioji, Tokyo 1920397, Japan
[3] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
关键词
adiabatic; antamanide; assignment; cross polarization; DREAM; MAS; polarization transfer; solid-state NMR; TOBSY; TOSSY;
D O I
10.1023/A:1011212100630
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The application of adiabatic polarization-transfer experiments to resonance assignment in solid, uniformly C-13-N-15-labelled polypeptides is demonstrated for the cyclic decapeptide antamanide. A homonuclear correlation experiment employing the DREAM sequence for adiabatic dipolar transfer yields a complete assignment of the C-alpha and aliphatic side-chain C-13 resonances to amino acid types. The same information can be obtained from a TOBSY experiment using the recently introduced P9(12)(1) TOBSY sequence, which employs the J couplings as a transfer mechanism. A comparison of the two methods is presented. Except for some aromatic phenylalanine resonances, a complete sequence-specific assignment of the C-13 and N-15 resonances in antamanide is achieved by a series of selective or broadband adiabatic triple-resonance experiments. Heteronuclear transfer by adiabatic-passage Hartmann-Hahn cross polarization is combined with adiabatic homonuclear transfer by the DREAM and rotational-resonance tickling sequences into two- and three-dimensional experiments. The performance of these experiments is evaluated quantitatively.
引用
收藏
页码:203 / 221
页数:19
相关论文
共 50 条
  • [21] 1H, 13C and 15N resonance assignment of human guanylate kinase
    Khan, Nazimuddin
    Ban, David
    Trigo-Mourino, Pablo
    Carneiro, Marta G.
    Konrad, Manfred
    Lee, Donghan
    Sabo, T. Michael
    BIOMOLECULAR NMR ASSIGNMENTS, 2018, 12 (01) : 11 - 14
  • [22] 1H, 13C, and 15N resonance assignment of photoactive yellow protein
    Pool, Trijntje J.
    Oktaviani, Nur Alia
    Kamikubo, Hironari
    Kataoka, Mikio
    Mulder, Frans A. A.
    BIOMOLECULAR NMR ASSIGNMENTS, 2013, 7 (01) : 97 - 100
  • [23] 1H, 13C and 15N resonance assignment of human guanylate kinase
    Nazimuddin Khan
    David Ban
    Pablo Trigo-Mourino
    Marta G. Carneiro
    Manfred Konrad
    Donghan Lee
    T. Michael Sabo
    Biomolecular NMR Assignments, 2018, 12 : 11 - 14
  • [24] 1H, 13C, and 15N resonance assignment of photoactive yellow protein
    Trijntje J. Pool
    Nur Alia Oktaviani
    Hironari Kamikubo
    Mikio Kataoka
    Frans A. A. Mulder
    Biomolecular NMR Assignments, 2013, 7 : 97 - 100
  • [25] Following the decomposition of ryegrass labelled with 13C and 15N in soil by solid-state nuclear magnetic resonance spectroscopy
    Hopkins, DW
    Chudek, JA
    Webster, EA
    Barraclough, D
    EUROPEAN JOURNAL OF SOIL SCIENCE, 1997, 48 (04) : 623 - 631
  • [26] Characterization of Humic Fractions in a 15N-labelled Soil by Solid-State 13C and 15N NMR
    CHENG LILI
    Pedosphere, 2001, (02) : 151 - 157
  • [27] Sequence-specific assignment of histidine and tryptophan ring 1H, 13C and 15N resonances in 13C/15N- and 2H/13C/15N-labelled proteins
    Frank Löhr
    Vicky Katsemi
    Marco Betz
    Judith Hartleib
    Heinz Rüterjans
    Journal of Biomolecular NMR, 2002, 22 : 153 - 164
  • [28] Sequence-specific assignment of histidine and tryptophan ring 1H, 13C and 15N resonances in 13C/15N- and 2H/13C/15N-labelled proteins
    Löhr, F
    Katsemi, V
    Betz, M
    Hartleib, J
    Rüterjans, H
    JOURNAL OF BIOMOLECULAR NMR, 2002, 22 (02) : 153 - 164
  • [29] 1H, 13C, and 15N resonance assignment of the SPFH domain of human stomatin
    Tsuruta, Tomoyuki
    Goda, Natsuko
    Umetsu, Yoshitaka
    Iwaya, Naoko
    Kuwahara, Yohta
    Hiroaki, Hidekazu
    BIOMOLECULAR NMR ASSIGNMENTS, 2012, 6 (01) : 23 - 25
  • [30] 1H, 15N, 13C resonance assignment of human GAP-43
    Andrea Gabriele Flamm
    Szymon Żerko
    Anna Zawadzka-Kazimierczuk
    Wiktor Koźmiński
    Robert Konrat
    Nicolas Coudevylle
    Biomolecular NMR Assignments, 2016, 10 : 171 - 174