Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides:: Quantification and application to antamanide

被引:88
|
作者
Detken, A
Hardy, EH
Ernst, M
Kainosho, M
Kawakami, T
Aimoto, S
Meier, BH [1 ]
机构
[1] ETH Honggerberg, Phys Chem Lab, CH-8093 Zurich, Switzerland
[2] Tokyo Metropolitan Univ, CREST, Japan Sci & Technol Corp, Hachioji, Tokyo 1920397, Japan
[3] Osaka Univ, Inst Prot Res, Suita, Osaka 5650871, Japan
关键词
adiabatic; antamanide; assignment; cross polarization; DREAM; MAS; polarization transfer; solid-state NMR; TOBSY; TOSSY;
D O I
10.1023/A:1011212100630
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
The application of adiabatic polarization-transfer experiments to resonance assignment in solid, uniformly C-13-N-15-labelled polypeptides is demonstrated for the cyclic decapeptide antamanide. A homonuclear correlation experiment employing the DREAM sequence for adiabatic dipolar transfer yields a complete assignment of the C-alpha and aliphatic side-chain C-13 resonances to amino acid types. The same information can be obtained from a TOBSY experiment using the recently introduced P9(12)(1) TOBSY sequence, which employs the J couplings as a transfer mechanism. A comparison of the two methods is presented. Except for some aromatic phenylalanine resonances, a complete sequence-specific assignment of the C-13 and N-15 resonances in antamanide is achieved by a series of selective or broadband adiabatic triple-resonance experiments. Heteronuclear transfer by adiabatic-passage Hartmann-Hahn cross polarization is combined with adiabatic homonuclear transfer by the DREAM and rotational-resonance tickling sequences into two- and three-dimensional experiments. The performance of these experiments is evaluated quantitatively.
引用
收藏
页码:203 / 221
页数:19
相关论文
共 50 条
  • [1] Methods for sequential resonance assignment in solid, uniformly 13C, 15N labelled peptides: Quantification and application to antamanide
    Andreas Detken
    Edme H. Hardy
    Matthias Ernst
    Masatsune Kainosho
    Toru Kawakami
    Saburo Aimoto
    Beat H. Meier
    Journal of Biomolecular NMR, 2001, 20 : 203 - 221
  • [2] Characterisation of uniformly 13C, 15N labelled bacteriochlorophyll a and bacteriopheophytin a in solution and in solid state: complete assignment of the 13C, 1H and 15N chemical shifts
    Egorova-Zachernyuk, Tatiana
    van Rossum, Barth
    Erkelens, Cees
    de Groot, Huub
    MAGNETIC RESONANCE IN CHEMISTRY, 2008, 46 (11) : 1074 - 1083
  • [3] Quantification of 13C, 15N labelled compounds with 13C, 15N edited 1H Nuclear Magnetic Resonance spectroscopy
    Qu, Runlian
    Shan, Lu
    Sun, Qun
    Wei, Yao
    Deng, Pengchi
    Hou, Xiandeng
    TALANTA, 2021, 224
  • [4] Solid-phase synthesis and purification of a set of uniformly 13C,15N labelled de novo designed membrane fusogenic peptides
    Agrawal, Prashant R.
    Hofmann, Mathias W.
    Meeuwenoord, Nico J.
    Filippov, Dmitri V.
    Stalz, Holger
    Hulsbergen, Frans
    Langosch, Dieter
    Overkleeft, Hermen S.
    De Groot, Hiliub
    JOURNAL OF PEPTIDE SCIENCE, 2007, 13 (02) : 75 - 80
  • [5] Internuclear distance measurements in uniformly 13C, 15N labeled peptides and proteins
    Jaroniec, CP
    Lansing, JC
    Tounge, BA
    Belenky, M
    Herzfeld, J
    Griffin, RG
    BIOPHYSICAL JOURNAL, 2002, 82 (01) : 469A - 469A
  • [6] 1H, 13C and 15N resonance assignment for barnase
    Korzhnev, DM
    Bocharov, EV
    Zhuravlyova, AV
    Tischenko, EV
    Reibarkh, MY
    Ermolyuk, YS
    Schulga, AA
    Kirpichnikov, MP
    Billeter, M
    Arseniev, AS
    APPLIED MAGNETIC RESONANCE, 2001, 21 (02) : 195 - 201
  • [7] 13C and 15N NMR studies of the interaction of gold(I) thiolates with thiourea (13C and 15N labelled)
    Isab, AA
    Ahmad, S
    Al-Arfaj, AR
    Akhtar, MN
    JOURNAL OF COORDINATION CHEMISTRY, 2003, 56 (02) : 95 - 101
  • [8] An extended combinatorial 15N, 13Cα, and 13C′ labeling approach to protein backbone resonance assignment
    Loehr, Frank
    Tumulka, Franz
    Bock, Christoph
    Abele, Rupert
    Doetsch, Volker
    JOURNAL OF BIOMOLECULAR NMR, 2015, 62 (03) : 263 - 279
  • [9] 1H, 15N, 13C resonance assignment of human osteopontin
    Gerald Platzer
    Szymon Żerko
    Saurabh Saxena
    Wiktor Koźmiński
    Robert Konrat
    Biomolecular NMR Assignments, 2015, 9 : 289 - 292
  • [10] 1H, 15N, 13C resonance assignment of human osteopontin
    Platzer, Gerald
    Zerko, Szymon
    Saxena, Saurabh
    Kozminski, Wiktor
    Konrat, Robert
    BIOMOLECULAR NMR ASSIGNMENTS, 2015, 9 (02) : 289 - 292