Highly sequence-specific, timing-controllable m6A demethylation by modulating RNA-binding affinity of m6A erasers

被引:0
|
作者
Otonari, Kenko [1 ]
Asami, Yuri [1 ]
Ogata, Kosuke [3 ]
Ishihama, Yasushi [2 ,3 ]
Futaki, Shiroh [1 ]
Imanishi, Miki [1 ]
机构
[1] Kyoto Univ, Inst Chem Res, Uji, Kyoto 6110011, Japan
[2] Kyoto Univ, Grad Sch Pharmaceut Sci, Kyoto 6068501, Japan
[3] Natl Inst Biomed Innovat Hlth & Nutr, Ibaraki, Osaka 5670085, Japan
关键词
NUCLEAR-RNA; SUBSTRATE; ALKBH5;
D O I
10.1039/d4cc04070h
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Recent advancements in tools using programmable RNA binding proteins and m(6)A-erasers enable sequence-selective and timing-controllable m(6)A demethylation. However, off-target effects are still a concern. This study addresses the problem by reducing the RNA-binding ability of m(6)A-erasers. The modulated m(6)A-erasers achieved sequence-specific and timing-controllable m(6)A demethylation with minimal off-target activity.
引用
收藏
页码:69 / 72
页数:5
相关论文
共 50 条
  • [41] Single-Cell Imaging of m6A Modified RNA Using m6A-Specific In Situ Hybridization Mediated Proximity Ligation Assay (m6AISH-PLA)
    Ren, Xiaojun
    Deng, Ruijie
    Zhang, Kaixiang
    Sun, Yupeng
    Li, Yue
    Li, Jinghong
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 2021, 60 (42) : 22646 - 22651
  • [42] Correction: Corrigendum: Structural basis for selective binding of m6A RNA by the YTHDC1 YTH domain
    Chao Xu
    Xiao Wang
    Ke Liu
    Ian A Roundtree
    Wolfram Tempel
    Yanjun Li
    Zhike Lu
    Chuan He
    Jinrong Min
    Nature Chemical Biology, 2015, 11 : 815 - 815
  • [43] Direct RNA sequencing enables m6A detection in endogenous transcript isoforms at base-specific resolution
    Lorenz, Daniel A.
    Sathe, Shashank
    Einstein, Jaclyn M.
    Yeo, Gene W.
    RNA, 2020, 26 (01) : 19 - 28
  • [44] A novel RT-QPCR-based assay for the relative quantification of residue specific m6A RNA methylation
    Ainara Castellanos-Rubio
    Izortze Santin
    Ane Olazagoitia-Garmendia
    Irati Romero-Garmendia
    Amaia Jauregi-Miguel
    Maria Legarda
    Jose Ramon Bilbao
    Scientific Reports, 9
  • [45] Stage-specific requirement for m6A RNA methylation during cardiac differentiation of pluripotent stem cells
    Dong, Shuai
    Sun, Yuetong
    Liu, Chang
    Li, Yanli
    Yu, Shanshan
    Zhang, Qi
    Xu, Yan
    DIFFERENTIATION, 2023, 133 : 77 - 87
  • [46] A novel RT-QPCR-based assay for the relative quantification of residue specific m6A RNA methylation
    Castellanos-Rubio, Ainara
    Santin, Izortze
    Olazagoitia-Garmendia, Ane
    Romero-Garmendia, Irati
    Jauregi-Miguel, Amaia
    Legarda, Maria
    Ramon Bilbao, Jose
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [47] Funm6AViewer: a web server and R package for functional analysis of context-specific m6A RNA methylation
    Zhang, Song-Yao
    Zhang, Shao-Wu
    Tang, Yujiao
    Fan, Xiao-Nan
    Meng, Jia
    BIOINFORMATICS, 2021, 37 (22) : 4277 - 4279
  • [48] Choreography of methylation: KDM4C histone demethylation enables ALKBH5 m6A RNA demethylation to sustain AML stem cells
    Sarma, Pranjal
    Plas, David R.
    BLOOD SCIENCE, 2020, 2 (04): : 144 - 145
  • [49] ALKBH5-mediated m6A RNA demethylation promotes antibacterial innate defense by intrinsically driving neutrophil generation and recruitment
    Liu, Yang
    Cao, Xuetao
    JOURNAL OF IMMUNOLOGY, 2023, 210 (01):
  • [50] Primary sequence-assisted prediction of m6A RNA methylation sites from Oxford nanopore direct RNA sequencing data
    Zhang, Yuxin
    Huang, Daiyun
    Wei, Zhen
    Chen, Kunqi
    METHODS, 2022, 203 : 62 - 69