Integrating Machine Learning in Metabolomics: A Path to Enhanced Diagnostics and Data Interpretation

被引:0
|
作者
Xu, Yudian [1 ]
Cao, Linlin [2 ]
Chen, Yifan [2 ]
Zhang, Ziyue [3 ,4 ]
Liu, Wanshan [3 ,4 ]
Li, He [1 ]
Ding, Chenhuan [1 ]
Pu, Jun [2 ]
Qian, Kun [2 ,3 ,4 ]
Xu, Wei [2 ]
机构
[1] Shanghai Jiao Tong Univ, Renji Hosp, Sch Med, Dept Tradit Chinese Med, Shanghai 200127, Peoples R China
[2] Shanghai Jiao Tong Univ, Renji Hosp, State Key Lab Oncogenes & Related Genes, Div Cardiol,Sch Med, 160 Pujian Rd, Shanghai 200127, Peoples R China
[3] Shanghai Jiao Tong Univ, Inst Med Robot, Sch Biomed Engn, Shanghai 200030, Peoples R China
[4] Shanghai Jiao Tong Univ, Med Res Inst 10, Shanghai 200030, Peoples R China
基金
中国国家自然科学基金;
关键词
clinical application; data process; machine learning; metabolomics; multiomics; DEEP NEURAL-NETWORK; ARTIFICIAL-INTELLIGENCE; MASS; METABOLITES; OMICS; ANNOTATION; IDENTIFICATION; MECHANISMS; MEDICINE; HEALTH;
D O I
10.1002/smtd.202400305
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Metabolomics, leveraging techniques like NMR and MS, is crucial for understanding biochemical processes in pathophysiological states. This field, however, faces challenges in metabolite sensitivity, data complexity, and omics data integration. Recent machine learning advancements have enhanced data analysis and disease classification in metabolomics. This study explores machine learning integration with metabolomics to improve metabolite identification, data efficiency, and diagnostic methods. Using deep learning and traditional machine learning, it presents advancements in metabolic data analysis, including novel algorithms for accurate peak identification, robust disease classification from metabolic profiles, and improved metabolite annotation. It also highlights multiomics integration, demonstrating machine learning's potential in elucidating biological phenomena and advancing disease diagnostics. This work contributes significantly to metabolomics by merging it with machine learning, offering innovative solutions to analytical challenges and setting new standards for omics data analysis. In the article, the author describes the merger of machine learning with metabolomics to enhance metabolite identification, data use, and diagnostics. It employs algorithms to advance metabolic data analysis for peak identification, disease classification from metabolic profiles, metabolite annotation and multi-omics integration. The research significantly advances metabolomics by providing novel analytical solutions and establishing new benchmarks for omics data analysis. image
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页数:12
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