Integrating Machine Learning in Metabolomics: A Path to Enhanced Diagnostics and Data Interpretation

被引:0
|
作者
Xu, Yudian [1 ]
Cao, Linlin [2 ]
Chen, Yifan [2 ]
Zhang, Ziyue [3 ,4 ]
Liu, Wanshan [3 ,4 ]
Li, He [1 ]
Ding, Chenhuan [1 ]
Pu, Jun [2 ]
Qian, Kun [2 ,3 ,4 ]
Xu, Wei [2 ]
机构
[1] Shanghai Jiao Tong Univ, Renji Hosp, Sch Med, Dept Tradit Chinese Med, Shanghai 200127, Peoples R China
[2] Shanghai Jiao Tong Univ, Renji Hosp, State Key Lab Oncogenes & Related Genes, Div Cardiol,Sch Med, 160 Pujian Rd, Shanghai 200127, Peoples R China
[3] Shanghai Jiao Tong Univ, Inst Med Robot, Sch Biomed Engn, Shanghai 200030, Peoples R China
[4] Shanghai Jiao Tong Univ, Med Res Inst 10, Shanghai 200030, Peoples R China
基金
中国国家自然科学基金;
关键词
clinical application; data process; machine learning; metabolomics; multiomics; DEEP NEURAL-NETWORK; ARTIFICIAL-INTELLIGENCE; MASS; METABOLITES; OMICS; ANNOTATION; IDENTIFICATION; MECHANISMS; MEDICINE; HEALTH;
D O I
10.1002/smtd.202400305
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Metabolomics, leveraging techniques like NMR and MS, is crucial for understanding biochemical processes in pathophysiological states. This field, however, faces challenges in metabolite sensitivity, data complexity, and omics data integration. Recent machine learning advancements have enhanced data analysis and disease classification in metabolomics. This study explores machine learning integration with metabolomics to improve metabolite identification, data efficiency, and diagnostic methods. Using deep learning and traditional machine learning, it presents advancements in metabolic data analysis, including novel algorithms for accurate peak identification, robust disease classification from metabolic profiles, and improved metabolite annotation. It also highlights multiomics integration, demonstrating machine learning's potential in elucidating biological phenomena and advancing disease diagnostics. This work contributes significantly to metabolomics by merging it with machine learning, offering innovative solutions to analytical challenges and setting new standards for omics data analysis. In the article, the author describes the merger of machine learning with metabolomics to enhance metabolite identification, data use, and diagnostics. It employs algorithms to advance metabolic data analysis for peak identification, disease classification from metabolic profiles, metabolite annotation and multi-omics integration. The research significantly advances metabolomics by providing novel analytical solutions and establishing new benchmarks for omics data analysis. image
引用
收藏
页数:12
相关论文
共 50 条
  • [31] Ensemble learning method for classification: Integrating data envelopment analysis with machine learning
    An, Qingxian
    Huang, Siwei
    Han, Yuxuan
    Zhu, You
    [J]. COMPUTERS & OPERATIONS RESEARCH, 2024, 169
  • [32] Intelligent geological interpretation of AMT data based on machine learning
    Wang, Shuo
    Yu, Xiang
    Zhao, Dan
    Ma, Guocai
    Ren, Wei
    Duan, Shuxin
    [J]. BIG DATA RESEARCH, 2024, 37
  • [33] CPT Data Interpretation Employing Different Machine Learning Techniques
    Rauter, Stefan
    Tschuchnigg, Franz
    [J]. GEOSCIENCES, 2021, 11 (07)
  • [34] Enhanced Immunohistochemistry Interpretation with a Machine Learning-Based Expert System
    Neagu, Anca Iulia
    Poalelungi, Diana Gina
    Fulga, Ana
    Neagu, Marius
    Fulga, Iuliu
    Nechita, Aurel
    [J]. DIAGNOSTICS, 2024, 14 (17)
  • [35] Enhanced cellulose nanofiber mechanical stability through ionic crosslinking and interpretation of adsorption data using machine learning
    Muqeet, Muhammad
    Malik, Hammad
    Panhwar, Sallahuddin
    Khan, Imran Ullah
    Hussain, Fida
    Asghar, Zeeshan
    Khatri, Zeeshan
    Mahar, Rasool Bux
    [J]. INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2023, 237
  • [36] Informed machine learning for image-data-driven diagnostics of hydrogenerators
    Jose, Sagar
    Zemouri, Ryad
    Levesque, Melanie
    Nguyen, Khanh T. P.
    Tahan, Antoine
    Medjaher, Kamal
    [J]. IFAC PAPERSONLINE, 2023, 56 (02): : 11912 - 11917
  • [37] Machine learning in cancer diagnostics
    不详
    [J]. EBIOMEDICINE, 2019, 45 : 1 - 2
  • [38] Potential value and impact of data mining and machine learning in clinical diagnostics
    Saberi-Karimian, Maryam
    Khorasanchi, Zahra
    Ghazizadeh, Hamideh
    Tayefi, Maryam
    Saffar, Sara
    Ferns, Gordon A.
    Ghayour-Mobarhan, Majid
    [J]. CRITICAL REVIEWS IN CLINICAL LABORATORY SCIENCES, 2021, 58 (04) : 275 - 296
  • [39] Interpretable Machine Learning on Metabolomics Data Reveals Biomarkers for Parkinson's Disease
    Zhang, J. Diana
    Xue, Chonghua
    Kolachalama, Vijaya B.
    Donald, William A.
    [J]. ACS CENTRAL SCIENCE, 2023, 9 (05) : 1035 - 1045
  • [40] Machine Learning Enhanced Access Control for Big Data
    Es-Samaali, Hamza
    Abou El Kalam, Anas
    Outchakoucht, Aissam
    Benhadou, Siham
    [J]. INTERNATIONAL JOURNAL OF COMPUTER SCIENCE AND NETWORK SECURITY, 2020, 20 (03): : 83 - 91