Integrating Machine Learning in Metabolomics: A Path to Enhanced Diagnostics and Data Interpretation

被引:0
|
作者
Xu, Yudian [1 ]
Cao, Linlin [2 ]
Chen, Yifan [2 ]
Zhang, Ziyue [3 ,4 ]
Liu, Wanshan [3 ,4 ]
Li, He [1 ]
Ding, Chenhuan [1 ]
Pu, Jun [2 ]
Qian, Kun [2 ,3 ,4 ]
Xu, Wei [2 ]
机构
[1] Shanghai Jiao Tong Univ, Renji Hosp, Sch Med, Dept Tradit Chinese Med, Shanghai 200127, Peoples R China
[2] Shanghai Jiao Tong Univ, Renji Hosp, State Key Lab Oncogenes & Related Genes, Div Cardiol,Sch Med, 160 Pujian Rd, Shanghai 200127, Peoples R China
[3] Shanghai Jiao Tong Univ, Inst Med Robot, Sch Biomed Engn, Shanghai 200030, Peoples R China
[4] Shanghai Jiao Tong Univ, Med Res Inst 10, Shanghai 200030, Peoples R China
基金
中国国家自然科学基金;
关键词
clinical application; data process; machine learning; metabolomics; multiomics; DEEP NEURAL-NETWORK; ARTIFICIAL-INTELLIGENCE; MASS; METABOLITES; OMICS; ANNOTATION; IDENTIFICATION; MECHANISMS; MEDICINE; HEALTH;
D O I
10.1002/smtd.202400305
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Metabolomics, leveraging techniques like NMR and MS, is crucial for understanding biochemical processes in pathophysiological states. This field, however, faces challenges in metabolite sensitivity, data complexity, and omics data integration. Recent machine learning advancements have enhanced data analysis and disease classification in metabolomics. This study explores machine learning integration with metabolomics to improve metabolite identification, data efficiency, and diagnostic methods. Using deep learning and traditional machine learning, it presents advancements in metabolic data analysis, including novel algorithms for accurate peak identification, robust disease classification from metabolic profiles, and improved metabolite annotation. It also highlights multiomics integration, demonstrating machine learning's potential in elucidating biological phenomena and advancing disease diagnostics. This work contributes significantly to metabolomics by merging it with machine learning, offering innovative solutions to analytical challenges and setting new standards for omics data analysis. In the article, the author describes the merger of machine learning with metabolomics to enhance metabolite identification, data use, and diagnostics. It employs algorithms to advance metabolic data analysis for peak identification, disease classification from metabolic profiles, metabolite annotation and multi-omics integration. The research significantly advances metabolomics by providing novel analytical solutions and establishing new benchmarks for omics data analysis. image
引用
收藏
页数:12
相关论文
共 50 条
  • [21] Smart-Grid Monitoring: Enhanced Machine Learning for Cable Diagnostics
    Huo, Yinjia
    Prasad, Gautham
    Lampe, Lutz
    Leung, Victor C. M.
    [J]. PROCEEDINGS OF THE 2019 IEEE INTERNATIONAL SYMPOSIUM ON POWER LINE COMMUNICATIONS AND ITS APPLICATIONS (ISPLC), 2019, : 36 - 41
  • [22] Enhanced Visualization and Interpretation of XMCD-PEEM Data Using SOM-RPM Machine Learning
    Wong, See Yoong
    Harmer, Sarah L.
    Gardner, Wil
    Schenk, Alex K.
    Ballabio, Davide
    Pigram, Paul J.
    [J]. ADVANCED MATERIALS INTERFACES, 2023, 10 (36)
  • [23] A Machine Learning Model to Characterize Chronic Kidney Disease with Metabolomics Data
    Yang, Yang
    Tong, Wei -Wei
    Liu, Zhangsuo
    [J]. 2019 IEEE INTERNATIONAL CONFERENCE ON HEALTHCARE INFORMATICS (ICHI), 2019, : 67 - 72
  • [24] Automated Machine Learning and Explainable AI (AutoML-XAI) for Metabolomics: Improving Cancer Diagnostics
    Bifarin, Olatomiwa O.
    Fernandez, Facundo M.
    [J]. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY, 2024, 35 (06) : 1089 - 1100
  • [25] Integration of metabolomics, lipidomics and clinical data using a machine learning method
    Animesh Acharjee
    Zsuzsanna Ament
    James A. West
    Elizabeth Stanley
    Julian L. Griffin
    [J]. BMC Bioinformatics, 17
  • [26] Integration of metabolomics, lipidomics and clinical data using a machine learning method
    Acharjee, Animesh
    Ament, Zsuzsanna
    West, James A.
    Stanley, Elizabeth
    Griffin, Julian L.
    [J]. BMC BIOINFORMATICS, 2016, 17
  • [27] Integrating the root cause analysis to machine learning interpretation for predicting future failure
    Aditiyawarman, Taufik
    Soedarsono, Johny Wahyuadi
    Kaban, Agus Paul Setiawan
    Suryadi, Haryo
    Rahmadani, Haryo
    Riastuti, Rini
    [J]. HELIYON, 2023, 9 (06)
  • [28] Bioinformatics Tools for the Interpretation of Metabolomics Data
    Gardinassi L.G.
    Xia J.
    Safo S.E.
    Li S.
    [J]. Current Pharmacology Reports, 2017, 3 (6) : 374 - 383
  • [29] Optical sensor for BTEX detection: Integrating machine learning for enhanced sensing
    Hashemitaheri, Mary
    Ebrahimi, Ebrahim
    de Silva, Geethanga
    Attariani, Hamed
    [J]. ADVANCED SENSOR AND ENERGY MATERIALS, 2024, 3 (03):
  • [30] Integrating nonparametric learning with path planning for data-ferry communications
    University of Colorado, Boulder
    CO
    80309, United States
    [J]. J. Aerosp. Inf. Sys., 12 (784-799):