Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

被引:0
|
作者
Serghei Mangul
Adrian Caciula
Sahar Al Seesi
Dumitru Brinza
Ion Mӑndoiu
Alex Zelikovsky
机构
[1] University of California,Department of Computer Science
[2] Georgia State University,Department of Computer Science
[3] University of Connecticut,Deptment of Computer Science & Engineering
[4] Life Technologies Corporation,Ion Bioinformatics
来源
BMC Genomics | / 15卷
关键词
Positive Predictive Value; Splice Event; Transcriptome Assembly; Annotate Transcript; Quantification Accuracy;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [41] De novo assembly of bacterial transcriptomes from RNA-seq data
    Brian Tjaden
    Genome Biology, 16
  • [42] RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
    Xia, Zhihui
    Xu, Huimin
    Zhai, Jinling
    Li, Dejun
    Luo, Hongli
    He, Chaozu
    Huang, Xi
    PLANT MOLECULAR BIOLOGY, 2011, 77 (03) : 299 - 308
  • [43] De novo transcriptome assembly of RNA-Seq reads with different strategies
    Chen Geng
    Yin KangPing
    Wang, Charles
    Shi TieLiu
    SCIENCE CHINA-LIFE SCIENCES, 2011, 54 (12) : 1129 - 1133
  • [44] Efficient RNA isoform identification and quantification from RNA-Seq data with network flows
    Bernard, Elsa
    Jacob, Laurent
    Mairal, Julien
    Vert, Jean-Philippe
    BIOINFORMATICS, 2014, 30 (17) : 2447 - 2455
  • [45] RNA-Seq analysis and de novo transcriptome assembly of Hevea brasiliensis
    Zhihui Xia
    Huimin Xu
    Jinling Zhai
    Dejun Li
    Hongli Luo
    Chaozu He
    Xi Huang
    Plant Molecular Biology, 2011, 77 : 299 - 308
  • [46] De novo transcriptome assembly of RNA-Seq reads with different strategies
    CHEN GengYIN KangPingWANG Charles SHI TieLiu Center for Bioinformatics and Computational BiologyInstitute of Biomedical SciencesSchool of Life ScienceEast China Normal UniversityShanghai ChinaFunctional Genomics CoreBeckman Research InstituteCity of Hope Comprehensive Cancer CenterDuarteCA USA
    Science China(Life Sciences), 2011, 54 (12) : 1129 - 1133
  • [47] IsoLasso: A LASSO Regression Approach to RNA-Seq Based Transcriptome Assembly
    Li, Wei
    Feng, Jianxing
    Jiang, Tao
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2011, 18 (11) : 1693 - 1707
  • [49] De novo transcriptome assembly of RNA-Seq reads with different strategies
    CHEN Geng1
    2Functional Genomics Core
    Science China Life Sciences, 2011, (12) : 1129 - 1133
  • [50] De novo transcriptome assembly of RNA-Seq reads with different strategies
    Geng Chen
    KangPing Yin
    Charles Wang
    TieLiu Shi
    Science China Life Sciences, 2011, 54 : 1129 - 1133