Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

被引：0
|
作者：
Serghei Mangul
Adrian Caciula
Sahar Al Seesi
Dumitru Brinza
Ion Mӑndoiu
Alex Zelikovsky
机构：
[1] University of California,Department of Computer Science
[2] Georgia State University,Department of Computer Science
[3] University of Connecticut,Deptment of Computer Science & Engineering
[4] Life Technologies Corporation,Ion Bioinformatics
来源：
BMC Genomics | / 15卷
关键词：
Positive Predictive Value; Splice Event; Transcriptome Assembly; Annotate Transcript; Quantification Accuracy;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [31] Acfs: accurate circRNA identification and quantification from RNA-Seq data
    Xintian You
    Tim OF Conrad
    Scientific Reports, 6
  • [32] Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
    Zhao, Qiong-Yi
    Wang, Yi
    Kong, Yi-Meng
    Luo, Da
    Li, Xuan
    Hao, Pei
    BMC BIOINFORMATICS, 2011, 12 : S2
  • [33] Identification of interleukin genes in Pogona vitticeps using a de novo transcriptome assembly from RNA-seq data
    Alexandra Livernois
    Kristine Hardy
    Renae Domaschenz
    Alexie Papanicolaou
    Arthur Georges
    Stephen D Sarre
    Sudha Rao
    Tariq Ezaz
    Janine E Deakin
    Immunogenetics, 2016, 68 : 719 - 731
  • [34] Optimizing de novo transcriptome assembly from short-read RNA-Seq data: a comparative study
    Qiong-Yi Zhao
    Yi Wang
    Yi-Meng Kong
    Da Luo
    Xuan Li
    Pei Hao
    BMC Bioinformatics, 12
  • [35] aTAP: automated transcriptome analysis platform for processing RNA-seq data by de novo assembly
    Surachat, Komwit
    Taylor, Todd Duane
    Wattanamatiphot, Wanicbut
    Sukpisit, Sukgamon
    Jeenkeawpiam, Kongpop
    HELIYON, 2022, 8 (08)
  • [36] Principles of transcriptome analysis and gene expression quantification: an RNA-seq tutorial
    Wolf, Jochen B. W.
    MOLECULAR ECOLOGY RESOURCES, 2013, 13 (04) : 559 - 572
  • [37] A Robust Method for Transcript Quantification with RNA-Seq Data
    Huang, Yan
    Hu, Yin
    Jones, Corbin D.
    MacLeod, James N.
    Chiang, Derek Y.
    Liu, Yufeng
    Prins, Jan F.
    Liu, Jinze
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2013, 20 (03) : 167 - 187
  • [38] IsoTree: A New Framework for de novo Transcriptome Assembly from RNA-seq Reads
    Zhao, Jin
    Feng, Haodi
    Zhu, Daming
    Zhang, Chi
    Xu, Ying
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 17 (03) : 938 - 948
  • [39] De novo assembly of bacterial transcriptomes from RNA-seq data
    Tjaden, Brian
    GENOME BIOLOGY, 2015, 16
  • [40] Transcriptome assembly and isoform expression level estimation from biased RNA-Seq reads
    Li, Wei
    Jiang, Tao
    BIOINFORMATICS, 2012, 28 (22) : 2914 - 2921
12345