HiCdat: a fast and easy-to-use Hi-C data analysis tool

被引:0
|
作者
Marc W. Schmid
Stefan Grob
Ueli Grossniklaus
机构
[1] University of Zurich,Institute of Plant Biology
[2] Universitätstrasse 2,Zurich
来源
关键词
Chromosome Conformation Capture (3C); Nuclear architecture; Hi-C; Data analysis; Sample comparison; Structural domains; Correlation to (epi-)genome;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] CoDeT: an easy-to-use community detection tool
    Yue, Yifei
    Wang, Chaokun
    Ying, Xiang
    Qian, Jun
    INTERNATIONAL JOURNAL OF DATA MINING AND BIOINFORMATICS, 2017, 19 (01) : 52 - 74
  • [22] The ACLEW DiViMe: An easy-to-use diarization tool
    Le Franc, Adrien
    Riebling, Eric
    Karadayi, Julien
    Wang, Yun
    Scaffl, Camila
    Metze, Florian
    Cristia, Alejandrina
    19TH ANNUAL CONFERENCE OF THE INTERNATIONAL SPEECH COMMUNICATION ASSOCIATION (INTERSPEECH 2018), VOLS 1-6: SPEECH RESEARCH FOR EMERGING MARKETS IN MULTILINGUAL SOCIETIES, 2018, : 1383 - 1387
  • [23] VEHiCLE: a Variationally Encoded Hi-C Loss Enhancement algorithm for improving and generating Hi-C data
    Highsmith, Max
    Cheng, Jianlin
    SCIENTIFIC REPORTS, 2021, 11 (01)
  • [24] y Computational Processing and Quality Control of Hi-C, Capture Hi-C and Capture-C Data
    Hansen, Peter
    Gargano, Michael
    Hecht, Jochen
    Ibn-Salem, Jonas
    Karlebach, Guy
    Roehr, Johannes T.
    Robinson, Peter N.
    GENES, 2019, 10 (07):
  • [25] VEHiCLE: a Variationally Encoded Hi-C Loss Enhancement algorithm for improving and generating Hi-C data
    Max Highsmith
    Jianlin Cheng
    Scientific Reports, 11
  • [26] EasyProt - An easy-to-use graphical platform for proteomics data analysis
    Gluck, Florent
    Hoogland, Christine
    Antinori, Paola
    Robin, Xavier
    Nikitin, Frederic
    Zufferey, Anne
    Pasquarello, Carla
    Fetaud, Vanessa
    Dayon, Loic
    Mueller, Markus
    Lisacek, Frederique
    Geiser, Laurent
    Hochstrasser, Denis
    Sanchez, Jean-Charles
    Scherl, Alexander
    JOURNAL OF PROTEOMICS, 2013, 79 : 146 - 160
  • [27] Software tools for visualizing Hi-C data
    Galip Gürkan Yardımcı
    William Stafford Noble
    Genome Biology, 18
  • [28] Mutplot: An easy-to-use online tool for plotting complex mutation data with flexibility
    Zhang, Weiwei
    Wang, Cheng
    Zhang, Xuan
    PLOS ONE, 2019, 14 (05):
  • [29] Measuring the reproducibility and quality of Hi-C data
    Galip Gürkan Yardımcı
    Hakan Ozadam
    Michael E. G. Sauria
    Oana Ursu
    Koon-Kiu Yan
    Tao Yang
    Abhijit Chakraborty
    Arya Kaul
    Bryan R. Lajoie
    Fan Song
    Ye Zhan
    Ferhat Ay
    Mark Gerstein
    Anshul Kundaje
    Qunhua Li
    James Taylor
    Feng Yue
    Job Dekker
    William S. Noble
    Genome Biology, 20
  • [30] YaHS: yet another Hi-C scaffolding tool
    Zhou, Chenxi
    McCarthy, Shane A.
    Durbin, Richard
    BIOINFORMATICS, 2023, 39 (01)