Evaluation of microarray data normalization procedures using spike-in experiments

被引：0
|
作者：
Patrik Rydén
Henrik Andersson
Mattias Landfors
Linda Näslund
Blanka Hartmanová
Laila Noppa
Anders Sjöstedt
机构：
[1] Umeå University,Department of Clinical Microbiology Division of Clinical Bacteriology
[2] Umeå University,Department of Mathematics and Mathematical Statistics
[3] University of Defence,Proteome Center for the Study of Intracellular Parasitism of Bacteria, Faculty of Military Health Science
[4] Swedish Defence Research Agency,Department of Medical Countermeasures, Division of NBC
来源：
BMC Bioinformatics | / 7卷
关键词：
Differentially Express; Classification Property; High Bias; Channel Adjustment; Background Adjustment;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [41] Oligonucleotide microarray data distribution and normalization
    Sidorov, IA
    Hosack, DA
    Gee, D
    Yang, J
    Cam, MC
    Lempicki, RA
    Dimitrov, DS
    PROCEEDINGS OF THE 6TH JOINT CONFERENCE ON INFORMATION SCIENCES, 2002, : 1219 - 1222
  • [42] The effect of normalization on microarray data analysis
    Ding, YY
    Wilkins, D
    DNA AND CELL BIOLOGY, 2004, 23 (10) : 635 - 642
  • [43] Oligonucleotide microarray data distribution and normalization
    Sidorov, IA
    Hosack, DA
    Gee, D
    Yang, J
    Cam, MC
    Lempicki, RA
    Dimitrov, DS
    INFORMATION SCIENCES, 2002, 146 (1-4) : 67 - 73
  • [44] ChIPseqSpikeInFree: a ChIP-seq normalization approach to reveal global changes in histone modifications without spike-in
    Jin, Hongjian
    Kasper, Lawryn H.
    Larson, Jon D.
    Wu, Gang
    Baker, Suzanne J.
    Zhang, Jinghui
    Fan, Yiping
    BIOINFORMATICS, 2020, 36 (04) : 1270 - 1272
  • [45] EVALUATION OF VOWEL NORMALIZATION PROCEDURES
    DISNER, SF
    JOURNAL OF THE ACOUSTICAL SOCIETY OF AMERICA, 1980, 67 (01): : 253 - 261
  • [46] Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
    Xiong, Huiling
    Zhang, Dapeng
    Martyniuk, Christopher J.
    Trudeau, Vance L.
    Xia, Xuhua
    BMC BIOINFORMATICS, 2008, 9 (1) : 25
  • [47] Using Generalized Procrustes Analysis (GPA) for normalization of cDNA microarray data
    Huiling Xiong
    Dapeng Zhang
    Christopher J Martyniuk
    Vance L Trudeau
    Xuhua Xia
    BMC Bioinformatics, 9
  • [48] Normalization of dye bias in microarray data using the mixture of splines model
    Joo, Yongsung
    Casella, George
    Booth, James
    Lee, Keunbaik
    Enkemann, Steven
    STATISTICAL APPLICATIONS IN GENETICS AND MOLECULAR BIOLOGY, 2007, 6
  • [49] Evaluation of normalization methods for cDNA microarray data by k-NN classification
    Wei Wu
    Eric P Xing
    Connie Myers
    I Saira Mian
    Mina J Bissell
    BMC Bioinformatics, 6
  • [50] A universal spike-in normalization strategy for CUT&RUN, CUT&Tag and ATAC-seq
    Traynor, Sarah
    Townsley, Bradley
    Weber, Julianna
    Jelinek, Mary Anne
    Egan, Brian
    Delatte, Benjamin
    CANCER RESEARCH, 2024, 84 (06)
12345