Evaluation of microarray data normalization procedures using spike-in experiments

被引:0
|
作者
Patrik Rydén
Henrik Andersson
Mattias Landfors
Linda Näslund
Blanka Hartmanová
Laila Noppa
Anders Sjöstedt
机构
[1] Umeå University,Department of Clinical Microbiology Division of Clinical Bacteriology
[2] Umeå University,Department of Mathematics and Mathematical Statistics
[3] University of Defence,Proteome Center for the Study of Intracellular Parasitism of Bacteria, Faculty of Military Health Science
[4] Swedish Defence Research Agency,Department of Medical Countermeasures, Division of NBC
来源
关键词
Differentially Express; Classification Property; High Bias; Channel Adjustment; Background Adjustment;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [21] SAMstrt: statistical test for differential expression in single-cell transcriptome with spike-in normalization
    Katayama, Shintaro
    Tohonen, Virpi
    Linnarsson, Sten
    Kere, Juha
    BIOINFORMATICS, 2013, 29 (22) : 2943 - 2945
  • [22] Normalization of cDNA microarray data by using neural networks
    Deng, C
    Zhang, PS
    Wang, AL
    Trummer, BJ
    Wang, DN
    PROCEEDING OF THE 2002 INTERNATIONAL JOINT CONFERENCE ON NEURAL NETWORKS, VOLS 1-3, 2002, : 290 - 295
  • [23] Normalization of cDNA microarray data using wavelet regressions
    Wang, J
    Ma, JZ
    Li, MD
    COMBINATORIAL CHEMISTRY & HIGH THROUGHPUT SCREENING, 2004, 7 (08) : 783 - 791
  • [24] Improving small RNA-seq by using a synthetic spike-in set for size-range quality control together with a set for data normalization
    Locati, Mauro D.
    Terpstra, Inez
    de Leeuw, Wim C.
    Kuzak, Mateusz
    Rauwerda, Han
    Ensink, Wim A.
    van Leeuwen, Selina
    Nehrdich, Ulrike
    Spaink, Herman P.
    Jonker, Martijs J.
    Breit, Timo M.
    Dekker, Rob J.
    NUCLEIC ACIDS RESEARCH, 2015, 43 (14) : e89
  • [25] A benchmark spike-in data set for biomarker identification in metabolomics
    Franceschi, Pietro
    Masuero, Domenico
    Vrhovsek, Urska
    Mattivi, Fulvio
    Wehrens, Ron
    JOURNAL OF CHEMOMETRICS, 2012, 26 (01) : 16 - 24
  • [26] Normalization of cDNA microarray data
    Smyth, GK
    Speed, T
    METHODS, 2003, 31 (04) : 265 - 273
  • [27] Normalization for cDNA microarray data
    Yang, YH
    Dudoit, S
    Luu, P
    Speed, TP
    MICROARRAYS: OPTICAL TECHNOLOGIES AND INFORMATICS, 2001, 4266 : 141 - 152
  • [28] Microarray data normalization and transformation
    John Quackenbush
    Nature Genetics, 2002, 32 : 496 - 501
  • [29] Microarray data normalization and transformation
    Quackenbush, J
    NATURE GENETICS, 2002, 32 (Suppl 4) : 496 - 501
  • [30] Evaluation of normalization methods for microarray
    Park, T
    Yi, SG
    Kang, SH
    Lee, S
    Lee, YS
    Simon, R
    BMC BIOINFORMATICS, 2003, 4 (1)