The unique probe selector: a comprehensive web service for probe design and oligonucleotide arrays

被引:0
|
作者
Shu-Hwa Chen
Chen-Zen Lo
Ming-Chi Tsai
Chao A Hsiung
Chung-Yen Lin
机构
[1] Academia Sinica,Stem Cell/Regenerative Medicine Program, Genomics Research Center
[2] Academia Sinica,Institute of Information Science
[3] National Health Research Institutes,Division of Biostatistics and Bioinformatics
[4] National Taiwan University,Institute of Fishery Science, College of Life Science
来源
关键词
Probe Design; Fasta Format; Unique Probe; Probe Length; Suffix Array;
D O I
暂无
中图分类号
学科分类号
摘要
引用
下载
收藏
相关论文
共 50 条
  • [41] Design and Verification of a Pangenome Microarray Oligonucleotide Probe Set for Dehalococcoides spp.
    Hug, Laura A.
    Salehi, Maryam
    Nuin, Paulo
    Tillier, Elisabeth R.
    Edwards, Elizabeth A.
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2011, 77 (15) : 5361 - 5369
  • [42] Improvement of oligonucleotide probe design criteria for functional gene microarrays in environmental applications
    Liebich, J
    Schadt, CW
    Chong, SC
    He, ZL
    Rhee, SK
    Zhou, JZ
    APPLIED AND ENVIRONMENTAL MICROBIOLOGY, 2006, 72 (02) : 1688 - 1691
  • [43] Web Service aggregation with string distance ensembles and active probe selection
    Johnston, Eddie
    Kushmerick, Nicholas
    INFORMATION FUSION, 2008, 9 (04) : 481 - 500
  • [44] A Comprehensive Numerical Study on Fiber Optic SERS Probe Design
    Kim, Sanggon
    Gomes, Orisson Ponce
    De Koninck, Yves
    Messaddeq, Younes
    JOURNAL OF PHYSICAL CHEMISTRY C, 2024, 128 (15): : 6357 - 6369
  • [45] Capturing sequence diversity in metagenomes with comprehensive and scalable probe design
    Hayden C. Metsky
    Katherine J. Siddle
    Adrianne Gladden-Young
    James Qu
    David K. Yang
    Patrick Brehio
    Andrew Goldfarb
    Anne Piantadosi
    Shirlee Wohl
    Amber Carter
    Aaron E. Lin
    Kayla G. Barnes
    Damien C. Tully
    Bjӧrn Corleis
    Scott Hennigan
    Giselle Barbosa-Lima
    Yasmine R. Vieira
    Lauren M. Paul
    Amanda L. Tan
    Kimberly F. Garcia
    Leda A. Parham
    Ikponmwosa Odia
    Philomena Eromon
    Onikepe A. Folarin
    Augustine Goba
    Etienne Simon-Lorière
    Lisa Hensley
    Angel Balmaseda
    Eva Harris
    Douglas S. Kwon
    Todd M. Allen
    Jonathan A. Runstadler
    Sandra Smole
    Fernando A. Bozza
    Thiago M. L. Souza
    Sharon Isern
    Scott F. Michael
    Ivette Lorenzana
    Lee Gehrke
    Irene Bosch
    Gregory Ebel
    Donald S. Grant
    Christian T. Happi
    Daniel J. Park
    Andreas Gnirke
    Pardis C. Sabeti
    Christian B. Matranga
    Nature Biotechnology, 2019, 37 : 160 - 168
  • [46] Capturing sequence diversity in metagenomes with comprehensive and scalable probe design
    Metsky, Hayden C.
    Siddle, Katherine J.
    Gladden-Young, Adrianne
    Qu, James
    Yang, David K.
    Brehio, Patrick
    Goldfarb, Andrew
    Piantadosi, Anne
    Wohl, Shirlee
    Carter, Amber
    Lin, Aaron E.
    Barnes, Kayla G.
    Tully, Damien C.
    Corleis, Bjorn
    Hennigan, Scott
    Barbosa-Lima, Giselle
    Vieira, Yasmine R.
    Paul, Lauren M.
    Tan, Amanda L.
    Garcia, Kimberly F.
    Parham, Leda A.
    Odia, Ikponmwosa
    Eromon, Philomena
    Folarin, Onikepe A.
    Goba, Augustine
    Simon-Loriere, Etienne
    Hensley, Lisa
    Balmaseda, Angel
    Harris, Eva
    Kwon, Douglas S.
    Allen, Todd M.
    Runstadler, Jonathan A.
    Smole, Sandra
    Bozza, Fernando A.
    Souza, Thiago M. L.
    Isern, Sharon
    Michael, Scott F.
    Lorenzana, Ivette
    Gehrke, Lee
    Bosch, Irene
    Ebel, Gregory
    Grant, Donald S.
    Happi, Christian T.
    Park, Daniel J.
    Gnirke, Andreas
    Sabeti, Pardis C.
    Matranga, Christian B.
    NATURE BIOTECHNOLOGY, 2019, 37 (02) : 160 - +
  • [47] KASpOD-a web service for highly specific and explorative oligonucleotide design
    Parisot, Nicolas
    Denonfoux, Jeremie
    Dugat-Bony, Eric
    Peyret, Pierre
    Peyretaillade, Eric
    BIOINFORMATICS, 2012, 28 (23) : 3161 - 3162
  • [48] MetaExploArrays : a large-scale oligonucleotide probe design software for explorative DNA microarrays
    Jaziri, Faouzi
    Hill, David R. C.
    Parisot, Nicolas
    Denonfoux, Jeremie
    Dugat-Bony, Eric
    Peyretaillade, Eric
    Peyret, Pierre
    2012 13TH INTERNATIONAL CONFERENCE ON PARALLEL AND DISTRIBUTED COMPUTING, APPLICATIONS, AND TECHNOLOGIES (PDCAT 2012), 2012, : 664 - 671
  • [49] PTPan-overcoming memory limitations in oligonucleotide string matching for primer/probe design
    Eissler, Tilo
    Hodges, Christopher P.
    Meier, Harald
    BIOINFORMATICS, 2011, 27 (20) : 2797 - 2805
  • [50] Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays
    Leah Barrera
    Chris Benner
    Yong-Chuan Tao
    Elizabeth Winzeler
    Yingyao Zhou
    BMC Bioinformatics, 5