Leveraging two-way probe-level block design for identifying differential gene expression with high-density oligonucleotide arrays

被引:0
|
作者
Leah Barrera
Chris Benner
Yong-Chuan Tao
Elizabeth Winzeler
Yingyao Zhou
机构
[1] Genomics Institute of the Novartis Research Foundation,Bioinformatics Graduate Program
[2] University of California,undefined
[3] Novartis Institutes for Biomedical Research,undefined
[4] The Scripps Research Institute,undefined
来源
关键词
gene expression analysis; differential expression; high-density oligonucleotide array; ANOVA; FDR;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 13 条
  • [1] Leveraging two-way prob-level block design for identifying differential gene expression with high-density oligonucleotide arrays
    Barrera, L
    Benner, C
    Tao, YC
    Winzeler, E
    Zhou, YY
    BMC BIOINFORMATICS, 2004, 5 (1)
  • [2] Unbiased characterization of high-density oligonucleotide microarrays using probe-level statistics
    Aimone, JB
    Gage, FH
    JOURNAL OF NEUROSCIENCE METHODS, 2004, 135 (1-2) : 27 - 33
  • [3] Analysis of differential gene expression in skeletal muscle of type 2 diabetes using high-density oligonucleotide arrays
    Patti, ME
    Cusi, K
    Pratipaniwatr, T
    Finlayson, J
    Landaker, EJ
    Mandarino, LJ
    DIABETES, 2000, 49 : A214 - A214
  • [4] A method for cross-species gene expression analysis with high-density oligonucleotide arrays
    Ji, W
    Zhou, WL
    Gregg, K
    Yu, N
    Davis, S
    Davis, S
    NUCLEIC ACIDS RESEARCH, 2004, 32 (11) : e93
  • [6] Probe-level linear model fitting and mixture modeling results in high accuracy detection of differential gene expression
    Sébastien Lemieux
    BMC Bioinformatics, 7
  • [7] Gene expression in PBMC from severe atopic dermatitis patients assessed by high-density oligonucleotide arrays
    Heishi, M
    Kagaya, S
    Katsunuma, T
    Akasawa, A
    Nakada, A
    Yayoi, L
    Katayama, H
    Oshida, T
    Sugita, Y
    Saito, H
    JOURNAL OF ALLERGY AND CLINICAL IMMUNOLOGY, 2002, 109 (01) : S111 - S111
  • [8] Gene expression screening of human mast cells and eosinophils using high-density oligonucleotide probe arrays: abundant expression of major basic protein in mast cells
    Nakajima, T
    Matsumoto, K
    Suto, H
    Tanaka, K
    Ebisawa, M
    Tomita, H
    Yuki, K
    Katsunuma, T
    Akasawa, A
    Hashida, R
    Sugita, Y
    Ogawa, H
    Ra, C
    Saito, H
    BLOOD, 2001, 98 (04) : 1127 - 1134
  • [9] Gene expression profiling of single cells on high-density oligonucleotide arrays: A novel approach to study early micrometastatic cancer cells
    Hartmann, Claudia H.
    Oruzio, Daniel
    Klein, Christoph A.
    CANCER RESEARCH, 2006, 66 (08)
  • [10] Patterns of gene expression in pituitary carcinomas and adenomas analyzed by high-density oligonucleotide arrays, reverse transcriptase-quantitative PCR, and protein expression
    Ruebel, Katharina H.
    Leontovich, Alexey A.
    Jin, Long
    Stilling, Gail A.
    Zhang, Heyu
    Qian, Xiang
    Nakamura, Nobuki
    Scheithauer, Bernd W.
    Kovacs, Kalman
    Lloyd, Ricardo V.
    ENDOCRINE, 2006, 29 (03) : 435 - 444