M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data

被引:0
|
作者
Yu Zhang
Changlin Wan
Pengcheng Wang
Wennan Chang
Yan Huo
Jian Chen
Qin Ma
Sha Cao
Chi Zhang
机构
[1] Jilin University,MOE Key Laboratory of Symbolic Computation and Knowledge Engineering, Colleges of Computer Science and Technology
[2] Indiana University,Center for Computational Biology and Bioinformatics
[3] School of Medicine,Department of Electronic Computer Engineering
[4] Purdue University,Department of Computer Science
[5] Indiana University-Purdue University Indianapolis,School of Fundamental Sciences
[6] China Medical University,Shanghai Pulmonary Hospital
[7] Tongji University School of Medicine,Department of Biomedical Informatics
[8] The Ohio State University,Department of Biostatistics
[9] Indiana University,undefined
[10] School of Medicine,undefined
[11] Department of Medical and Molecular Genetics,undefined
来源
关键词
Single cell RNA-seq; Multimodality; Differential gene expression analysis; Drop-seq; Left truncated mixture Gaussian;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [31] A comparison of integration methods for single-cell RNA sequencing data and ATAC sequencing data
    Kan, Yulong
    Wang, Weihao
    Qi, Yunjing
    Zhang, Zhongxiao
    Liang, Xikeng
    Jin, Shuilin
    QUANTITATIVE BIOLOGY, 2025, 13 (02)
  • [32] Comprehensive review on single-cell RNA sequencing: A new frontier in Alzheimer's disease research
    Jin, Wengang
    Pei, Jinjin
    Roy, Jeane Rebecca
    Jayaraman, Selvaraj
    Ahalliya, Rathi Muthaiyan
    Kanniappan, Gopalakrishnan Velliyur
    Mironescu, Monica
    Palanisamy, Chella Perumal
    AGEING RESEARCH REVIEWS, 2024, 100
  • [33] MISC: missing imputation for single-cell RNA sequencing data
    Yang, Mary Qu
    Weissman, Sherman M.
    Yang, William
    Zhang, Jialing
    Canaann, Allon
    Guan, Renchu
    BMC SYSTEMS BIOLOGY, 2018, 12
  • [34] An Introduction to the Analysis of Single-Cell RNA-Sequencing Data
    AlJanahi, Aisha A.
    Danielsen, Mark
    Dunbar, Cynthia E.
    MOLECULAR THERAPY-METHODS & CLINICAL DEVELOPMENT, 2018, 10 : 189 - 196
  • [35] SNV identification from single-cell RNA sequencing data
    Schnepp, Patricia M.
    Chen, Mengjie
    Keller, Evan T.
    Zhou, Xiang
    HUMAN MOLECULAR GENETICS, 2019, 28 (21) : 3569 - 3583
  • [36] Normalizing single-cell RNA sequencing data: Challenges and opportunities
    Vallejos C.A.
    Risso D.
    Scialdone A.
    Dudoit S.
    Marioni J.C.
    Nature Methods, 2017, 14 (6) : 565 - 571
  • [37] Analysis of single-cell RNA sequencing data based on autoencoders
    Andrea Tangherloni
    Federico Ricciuti
    Daniela Besozzi
    Pietro Liò
    Ana Cvejic
    BMC Bioinformatics, 22
  • [38] SCRIP: an accurate simulator for single-cell RNA sequencing data
    Qin, Fei
    Luo, Xizhi
    Xiao, Feifei
    Cai, Guoshuai
    BIOINFORMATICS, 2022, 38 (05) : 1304 - 1311
  • [39] The shaky foundations of simulating single-cell RNA sequencing data
    Crowell, Helena L.
    Leonardo, Sarah X. Morillo X.
    Soneson, Charlotte
    Robinson, Mark D.
    GENOME BIOLOGY, 2023, 24 (01)
  • [40] Analysis of single-cell RNA sequencing data based on autoencoders
    Tangherloni, Andrea
    Ricciuti, Federico
    Besozzi, Daniela
    Lio, Pietro
    Cvejic, Ana
    BMC BIOINFORMATICS, 2021, 22 (01)