M3S: a comprehensive model selection for multi-modal single-cell RNA sequencing data

被引:0
|
作者
Yu Zhang
Changlin Wan
Pengcheng Wang
Wennan Chang
Yan Huo
Jian Chen
Qin Ma
Sha Cao
Chi Zhang
机构
[1] Jilin University,MOE Key Laboratory of Symbolic Computation and Knowledge Engineering, Colleges of Computer Science and Technology
[2] Indiana University,Center for Computational Biology and Bioinformatics
[3] School of Medicine,Department of Electronic Computer Engineering
[4] Purdue University,Department of Computer Science
[5] Indiana University-Purdue University Indianapolis,School of Fundamental Sciences
[6] China Medical University,Shanghai Pulmonary Hospital
[7] Tongji University School of Medicine,Department of Biomedical Informatics
[8] The Ohio State University,Department of Biostatistics
[9] Indiana University,undefined
[10] School of Medicine,undefined
[11] Department of Medical and Molecular Genetics,undefined
来源
关键词
Single cell RNA-seq; Multimodality; Differential gene expression analysis; Drop-seq; Left truncated mixture Gaussian;
D O I
暂无
中图分类号
学科分类号
摘要
引用
收藏
相关论文
共 50 条
  • [11] resVAE ensemble: Unsupervised identification of gene sets in multi-modal single-cell sequencing data using deep ensembles
    Ten, Foo Wei
    Yuan, Dongsheng
    Jabareen, Nabil
    Phua, Yin Jun
    Eils, Roland
    Lukassen, Soeren
    Conrad, Christian
    FRONTIERS IN CELL AND DEVELOPMENTAL BIOLOGY, 2023, 11
  • [12] M3S: Scene Graph Driven Multi-Granularity Multi-Task Learning for Multi-Modal NER
    Wang, Jie
    Yang, Yan
    Liu, Keyu
    Zhu, Zhiping
    Liu, Xiaorong
    IEEE-ACM TRANSACTIONS ON AUDIO SPEECH AND LANGUAGE PROCESSING, 2023, 31 : 111 - 120
  • [13] A comparison of marker gene selection methods for single-cell RNA sequencing data
    Pullin, Jeffrey M.
    McCarthy, Davis J.
    GENOME BIOLOGY, 2024, 25 (01)
  • [14] A comparison of marker gene selection methods for single-cell RNA sequencing data
    Jeffrey M. Pullin
    Davis J. McCarthy
    Genome Biology, 25
  • [15] Evaluation of single-cell classifiers for single-cell RNA sequencing data sets
    Zhao, Xinlei
    Wu, Shuang
    Fang, Nan
    Sun, Xiao
    Fan, Jue
    BRIEFINGS IN BIOINFORMATICS, 2020, 21 (05) : 1581 - 1595
  • [16] Multi-Modal Single-Cell Sequencing Identifies Cellular Immunophenotypes Associated With Juvenile Dermatomyositis Disease Activity
    Neely, Jessica
    Hartoularos, George
    Bunis, Daniel
    Sun, Yang
    Lee, David
    Kim, Susan
    Ye, Chun Jimmie
    Sirota, Marina
    FRONTIERS IN IMMUNOLOGY, 2022, 13
  • [17] Comprehensive analysis of a mouse model of spontaneous uveoretinitis using single-cell RNA sequencing
    Heng, Jacob S.
    Hackett, Sean F.
    Stein-O'Brien, Genevieve L.
    Winer, Briana L.
    Williams, John
    Goff, Loyal A.
    Nathans, Jeremy
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2019, 116 (52) : 26734 - 26744
  • [18] Complex Analysis of Single-Cell RNA Sequencing Data
    Khozyainova, Anna A. A.
    Valyaeva, Anna A. A.
    Arbatsky, Mikhail S. S.
    Isaev, Sergey V. V.
    Iamshchikov, Pavel S. S.
    Volchkov, Egor V. V.
    Sabirov, Marat S. S.
    Zainullina, Viktoria R. R.
    Chechekhin, Vadim I. I.
    Vorobev, Rostislav S. S.
    Menyailo, Maxim E. E.
    Tyurin-Kuzmin, Pyotr A. A.
    Denisov, Evgeny V. V.
    BIOCHEMISTRY-MOSCOW, 2023, 88 (02) : 231 - 252
  • [19] Splatter: simulation of single-cell RNA sequencing data
    Zappia, Luke
    Phipson, Belinda
    Oshlack, Alicia
    GENOME BIOLOGY, 2017, 18
  • [20] Complex Analysis of Single-Cell RNA Sequencing Data
    Anna A. Khozyainova
    Anna A. Valyaeva
    Mikhail S. Arbatsky
    Sergey V. Isaev
    Pavel S. Iamshchikov
    Egor V. Volchkov
    Marat S. Sabirov
    Viktoria R. Zainullina
    Vadim I. Chechekhin
    Rostislav S. Vorobev
    Maxim E. Menyailo
    Pyotr A. Tyurin-Kuzmin
    Evgeny V. Denisov
    Biochemistry (Moscow), 2023, 88 : 231 - 252