Similarity and Dissimilarity Regularized Nonnegative Matrix Factorization for Single-Cell RNA-seq Analysis

被引：0
|
作者：
Ya-Li Zhu
Sha-Sha Yuan
Jin-Xing Liu
机构：
[1] Qufu Normal University,School of Computer Science
[2] Rizhao Huilian Zhongchuang Institute of Intelligent Technology,undefined
来源：
Interdisciplinary Sciences: Computational Life Sciences | 2022年 / 14卷
关键词：
Nonnegative matrix factorization; Dimension reduction; Single-cell RNA sequencing; Clustering;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
页码：45 / 54
页数：9
相关论文
共 50 条
  • [21] Analysis of Single-Cell RNA-seq Data by Clustering Approaches
    Zhu, Xiaoshu
    Li, Hong-Dong
    Guo, Lilu
    Wu, Fang-Xiang
    Wang, Jianxin
    CURRENT BIOINFORMATICS, 2019, 14 (04) : 314 - 322
  • [22] Combining Global-Constrained Concept Factorization and a Regularized Gaussian Graphical Model for Clustering Single-Cell RNA-seq Data
    Xu, Yaxin
    Zhang, Wei
    Zheng, Xiaoying
    Cai, Xianxian
    INTERDISCIPLINARY SCIENCES-COMPUTATIONAL LIFE SCIENCES, 2024, 16 (01) : 1 - 15
  • [23] Combining Global-Constrained Concept Factorization and a Regularized Gaussian Graphical Model for Clustering Single-Cell RNA-seq Data
    Yaxin Xu
    Wei Zhang
    Xiaoying Zheng
    Xianxian Cai
    Interdisciplinary Sciences: Computational Life Sciences, 2024, 16 : 1 - 15
  • [24] SINCERA: A Pipeline for Single-Cell RNA-Seq Profiling Analysis
    Guo, Minzhe
    Wang, Hui
    Potter, S. Steven
    Whitsett, Jeffrey A.
    Xu, Yan
    PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (11)
  • [25] alona: a web server for single-cell RNA-seq analysis
    Franzen, Oscar
    Bjorkegren, Johan L. M.
    BIOINFORMATICS, 2020, 36 (12) : 3910 - 3912
  • [26] Comparative Analysis of Single-Cell RNA-seq Cluster Methods
    Fang, Jingwen
    Yin, Zhaohua
    Guo, Chuang
    2ND INTERNATIONAL CONFERENCE ON FRONTIERS OF BIOLOGICAL SCIENCES AND ENGINEERING (FSBE 2019), 2020, 2208
  • [27] Correlation Imputation for Single-Cell RNA-seq
    Gan, Luqin
    Vinci, Giuseppe
    Allen, Genevera I.
    JOURNAL OF COMPUTATIONAL BIOLOGY, 2022, 29 (05) : 465 - 482
  • [28] SCell: integrated analysis of single-cell RNA-seq data
    Diaz, Aaron
    Liu, Siyuan J.
    Sandoval, Carmen
    Pollen, Alex
    Nowakowski, Tom J.
    Lim, Daniel A.
    Kriegstein, Arnold
    BIOINFORMATICS, 2016, 32 (14) : 2219 - 2220
  • [29] PRECISION AND ACCURACY IN SINGLE-CELL RNA-SEQ
    Dai, Rujia
    Zhang, Ming
    Chu, Tianyao
    Kopp, Richard
    Zhang, Chunling
    Liu, Kefu
    Wang, Yue
    Wang, Xusheng
    Chen, Chao
    Liu, Chunyu
    EUROPEAN NEUROPSYCHOPHARMACOLOGY, 2024, 87 : 21 - 21
  • [30] Single-cell RNA-seq—now with protein
    Vesna Todorovic
    Nature Methods, 2017, 14 : 1028 - 1029
12345