Bi-objective integer programming for RNA secondary structure prediction with pseudoknots

被引：0
|
作者：
Audrey Legendre
Eric Angel
Fariza Tahi
机构：
[1] IBISC,
[2] Univ Evry,undefined
[3] Université Paris-Saclay,undefined
来源：
BMC Bioinformatics | / 19卷
关键词：
RNA; Secondary structure; Pseudoknot; Integer programming; Bi-objective; Optimal solutions; Sub-optimal solutions;
D O I：
暂无
中图分类号：
学科分类号：
摘要：
引用
收藏
相关论文
共 50 条
  • [21] A dynamic programming algorithm for RNA structure prediction including pseudoknots
    Rivas, E
    Eddy, SR
    JOURNAL OF MOLECULAR BIOLOGY, 1999, 285 (05) : 2053 - 2068
  • [22] An Integer Linear Programming approach to the single and bi-objective Next Release Problem
    Veerapen, Nadarajen
    Ochoa, Gabriela
    Harman, Mark
    Burke, Edmund K.
    INFORMATION AND SOFTWARE TECHNOLOGY, 2015, 65 : 1 - 13
  • [23] Prediction of RNA secondary structures with pseudoknots
    Bon, M.
    Orland, H.
    PHYSICA A-STATISTICAL MECHANICS AND ITS APPLICATIONS, 2010, 389 (15) : 2987 - 2992
  • [24] ProbKnot: Fast prediction of RNA secondary structure including pseudoknots
    Bellaousov, Stanislav
    Mathews, David H.
    RNA, 2010, 16 (10) : 1870 - 1880
  • [25] A fast algorithm for RNA secondary structure prediction including pseudoknots
    Tahi, F
    Engelen, S
    Régnier, M
    THIRD IEEE SYMPOSIUM ON BIOINFORMATICS AND BIOENGINEERING - BIBE 2003, PROCEEDINGS, 2003, : 11 - 17
  • [26] Pseudoknots Prediction on RNA Secondary Structure Using Term Rewriting
    Chowdhury, Linkon
    Khan, Mohammad Ibrahim
    BIOINFORMATICS AND BIOMEDICAL ENGINEERING (IWBBIO 2015), PT I, 2015, 9043 : 577 - 588
  • [27] Prediction of RNA secondary structure including pseudoknots for long sequences
    Sato, Kengo
    Kato, Yuki
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (01)
  • [28] Pseudoknots in RNA Structure Prediction
    Hollar, Andrew
    Bursey, Hunter
    Jabbari, Hosna
    CURRENT PROTOCOLS, 2023, 3 (02):
  • [29] A bi-objective integer programming model for locating garbage accumulation points: a case study
    Gabriel Rossit, Diego
    Nesmachnow, Sergio
    Toutouh, Jamal
    REVISTA FACULTAD DE INGENIERIA-UNIVERSIDAD DE ANTIOQUIA, 2019, (93): : 70 - 81
  • [30] Risk management for cyber-infrastructure protection: A bi-objective integer programming approach
    Schmidt, Adam
    Albert, Laura A.
    Zheng, Kaiyue
    RELIABILITY ENGINEERING & SYSTEM SAFETY, 2021, 205
12345