Association analyses identify 31 new risk loci for colorectal cancer susceptibility

被引:0
|
作者
Philip J. Law
Maria Timofeeva
Ceres Fernandez-Rozadilla
Peter Broderick
James Studd
Juan Fernandez-Tajes
Susan Farrington
Victoria Svinti
Claire Palles
Giulia Orlando
Amit Sud
Amy Holroyd
Steven Penegar
Evropi Theodoratou
Peter Vaughan-Shaw
Harry Campbell
Lina Zgaga
Caroline Hayward
Archie Campbell
Sarah Harris
Ian J. Deary
John Starr
Laura Gatcombe
Maria Pinna
Sarah Briggs
Lynn Martin
Emma Jaeger
Archana Sharma-Oates
James East
Simon Leedham
Roland Arnold
Elaine Johnstone
Haitao Wang
David Kerr
Rachel Kerr
Tim Maughan
Richard Kaplan
Nada Al-Tassan
Kimmo Palin
Ulrika A. Hänninen
Tatiana Cajuso
Tomas Tanskanen
Johanna Kondelin
Eevi Kaasinen
Antti-Pekka Sarin
Johan G. Eriksson
Harri Rissanen
Paul Knekt
Eero Pukkala
Pekka Jousilahti
机构
[1] The Institute of Cancer Research,Division of Genetics and Epidemiology
[2] University of Edinburgh,Colon Cancer Genetics Group, Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital
[3] Instituto de Investigación de Santiago,Grupo de Medicina Xenómica, Fundación Pública Galega de Medicina Xenómica
[4] University of Birmingham,Cancer Genetics and Evolution Laboratory, Institute of Cancer and Genomic Sciences
[5] McCarthy Group,Wellcome Centre for Human Genetics
[6] University of Birmingham,Gastrointestinal Cancer Genetics Laboratory, Institute of Cancer and Genomic Sciences
[7] University of Edinburgh,Centre for Global Health Research, Usher Institute
[8] University of Dublin,Department of Public Health and Primary Care, Institute of Population Health, Trinity College Dublin
[9] University of Edinburgh,Medical Research Council Human Genetics Unit, Institute of Genetics and Molecular Medicine, Western General Hospital
[10] University of Edinburgh,Generation Scotland, Centre for Genomic and Experimental Medicine, MRC Institute of Genetics and Molecular Medicine
[11] University of Edinburgh,Centre for Cognitive Ageing and Cognitive Epidemiology
[12] University of Edinburgh,Department of Psychology
[13] University of Edinburgh,Medical Genetics Section, Centre for Genomics and Experimental Medicine, Institute of Genetics and Molecular Medicine
[14] University of Edinburgh,Alzheimer Scotland Dementia Research Centre
[15] University of Oxford,Translational Gastroenterology Unit, Nuffield Department. of Medicine
[16] John Radcliffe Hospital,Cancer Bioinfomatics Laboratory, Institute of Cancer and Genomic Sciences
[17] University of Birmingham,Department of Oncology
[18] University of Oxford,Nuffield Department of Clinical Laboratory Sciences, John Radcliffe Hospital
[19] University of Oxford,Department of Genetics
[20] Medical Research Council Clinical Trials Unit,Department of Medical and Clinical Genetics, Medicum and Genome
[21] King Faisal Specialist Hospital and Research Center,Scale Biology Research Program, Research Programs Unit
[22] University of Helsinki,Institute for Molecular Medicine Finland (FIMM)
[23] University of Helsinki,Unit of General Practice and Primary Health Care
[24] Folkhälsan Research Centre,Finnish Cancer Registry, Institute for Statistical and Epidemiological Cancer Research, Helsinki, Finland, and Faculty of Social Sciences
[25] University of Helsinki and Helsinki University Hospital,Faculty of Social Sciences
[26] National Institute for Health and Welfare,Department of Public Health
[27] University of Tampere,Analytic and Translational Genetics Unit, Department of Medicine
[28] University of Tampere,Department of Surgery, Abdominal Center
[29] University of Helsinki,Department of Pathology
[30] Broad Institute of MIT and Harvard,Department of Surgery
[31] Massachusetts General Hospital,Department of Health Sciences, Faculty of Sport and Health Sciences
[32] Helsinki University Hospital,Colorectal Oncogenomics Group, Department of Clinical Pathology
[33] Central Finland Central Hospital,Victorian Comprehensive Cancer Centre
[34] Jyväskylä Central Hospital,Genomic Medicine and Family Cancer Clinic
[35] University of Jyväskylä,Centre for Epidemiology and Biostatistics
[36] The University of Melbourne,Department of Health Sciences Research
[37] University of Melbourne,Cancer Prevention Program
[38] Centre for Cancer Research,Mount Sinai Hospital
[39] Royal Melbourne Hospital,Center for Public Health Genomics
[40] The University of Melbourne,Human Genomics Research Group, Department of Biomedicine
[41] Mayo Clinic,Department of Genomics, Life & Brain Center
[42] Fred Hutchinson Cancer Research Center,Institute of Human Genetics
[43] Lunenfeld-Tanenbaum Research Institute,Institute for Medical Informatics, Biometry and Epidemiology, University Hospital Essen
[44] Translational Genomics Research Institute (TGen),Centre for Cancer Genetic Epidemiology, Department of Oncology
[45] An Affiliate of City of Hope,Centre for Cancer Genetic Epidemiology, Department of Public Health and Primary Care
[46] University of Virginia,Department of Non
[47] University of Basel,Communicable Disease Epidemiology
[48] University of Bonn,Genomic Epidemiology Group
[49] University of Bonn School of Medicine & University Hospital Bonn,Division of Breast Cancer Research
[50] University of Duisburg-Essen,Division of Population Health, Health Services Research and Primary Care
来源
关键词
D O I
暂无
中图分类号
学科分类号
摘要
Colorectal cancer (CRC) is a leading cause of cancer-related death worldwide, and has a strong heritable basis. We report a genome-wide association analysis of 34,627 CRC cases and 71,379 controls of European ancestry that identifies SNPs at 31 new CRC risk loci. We also identify eight independent risk SNPs at the new and previously reported European CRC loci, and a further nine CRC SNPs at loci previously only identified in Asian populations. We use in situ promoter capture Hi-C (CHi-C), gene expression, and in silico annotation methods to identify likely target genes of CRC SNPs. Whilst these new SNP associations implicate target genes that are enriched for known CRC pathways such as Wnt and BMP, they also highlight novel pathways with no prior links to colorectal tumourigenesis. These findings provide further insight into CRC susceptibility and enhance the prospects of applying genetic risk scores to personalised screening and prevention.
引用
收藏
相关论文
共 50 条
  • [31] Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations
    Liu, Jimmy Z.
    van Sommeren, Suzanne
    Huang, Hailiang
    Ng, Siew C.
    Alberts, Rudi
    Takahashi, Atsushi
    Ripke, Stephan
    Lee, James C.
    Jostins, Luke
    Shah, Tejas
    Abedian, Shifteh
    Cheon, Jae Hee
    Cho, Judy
    Daryani, Naser E.
    Franke, Lude
    Fuyuno, Yuta
    Hart, Ailsa
    Juyal, Ramesh C.
    Juyal, Garima
    Kim, Won Ho
    Morris, Andrew P.
    Poustchi, Hossein
    Newman, William G.
    Midha, Vandana
    Orchard, Timothy R.
    Vahedi, Homayon
    Sood, Ajit
    Sung, Joseph J. Y.
    Malekzadeh, Reza
    Westra, Harm-Jan
    Yamazaki, Keiko
    Yang, Suk-Kyun
    Barrett, Jeffrey C.
    Franke, Andre
    Alizadeh, Behrooz Z.
    Parkes, Miles
    Thelma, B. K.
    Daly, Mark J.
    Kubo, Michiaki
    Anderson, Carl A.
    Weersma, Rinse K.
    NATURE GENETICS, 2015, 47 (09) : 979 - +
  • [32] Association Between Colorectal Cancer Susceptibility Loci and Survival Time After Diagnosis With Colorectal Cancer
    Phipps, Amanda I.
    Newcomb, Polly A.
    Garcia-Albeniz, Xabier
    Hutter, Carolyn M.
    White, Emily
    Fuchs, Charles S.
    Hazra, Aditi
    Ogino, Shuji
    Nan, Hongmei
    Ma, Jing
    Campbell, Peter T.
    Figueiredo, Jane C.
    Peters, Ulrike
    Chan, Andrew T.
    GASTROENTEROLOGY, 2012, 143 (01) : 51 - U555
  • [33] Genome-wide association study of colorectal cancer identifies six new susceptibility loci
    Fredrick R. Schumacher
    Stephanie L. Schmit
    Shuo Jiao
    Christopher K. Edlund
    Hansong Wang
    Ben Zhang
    Li Hsu
    Shu-Chen Huang
    Christopher P. Fischer
    John F. Harju
    Gregory E. Idos
    Flavio Lejbkowicz
    Frank J. Manion
    Kevin McDonnell
    Caroline E. McNeil
    Marilena Melas
    Hedy S. Rennert
    Wei Shi
    Duncan C. Thomas
    David J. Van Den Berg
    Carolyn M. Hutter
    Aaron K. Aragaki
    Katja Butterbach
    Bette J. Caan
    Christopher S. Carlson
    Stephen J. Chanock
    Keith R. Curtis
    Charles S. Fuchs
    Manish Gala
    Edward L. Giovannucci
    Stephanie M. Gogarten
    Richard B. Hayes
    Brian Henderson
    David J. Hunter
    Rebecca D. Jackson
    Laurence N. Kolonel
    Charles Kooperberg
    Sébastien Küry
    Andrea LaCroix
    Cathy C. Laurie
    Cecelia A. Laurie
    Mathieu Lemire
    David Levine
    Jing Ma
    Karen W. Makar
    Conghui Qu
    Darin Taverna
    Cornelia M. Ulrich
    Kana Wu
    Suminori Kono
    Nature Communications, 6
  • [34] Genome-wide association study of colorectal cancer identifies six new susceptibility loci
    Schumacher, Fredrick R.
    Schmit, Stephanie L.
    Jiao, Shuo
    Edlund, Christopher K.
    Wang, Hansong
    Zhang, Ben
    Hsu, Li
    Huang, Shu-Chen
    Fischer, Christopher P.
    Harju, John F.
    Idos, Gregory E.
    Lejbkowicz, Flavio
    Manion, Frank J.
    McDonnell, Kevin
    McNeil, Caroline E.
    Melas, Marilena
    Rennert, Hedy S.
    Shi, Wei
    Thomas, Duncan C.
    Van Den Berg, David J.
    Hutter, Carolyn M.
    Aragaki, Aaron K.
    Butterbach, Katja
    Caan, Bette J.
    Carlson, Christopher S.
    Chanock, Stephen J.
    Curtis, Keith R.
    Fuchs, Charles S.
    Gala, Manish
    Giocannucci, Edward L.
    Gogarten, Stephanie M.
    Hayes, Richard B.
    Henderson, Brian
    Hunter, David J.
    Jackson, Rebecca D.
    Kolonel, Laurence N.
    Kooperberg, Charles
    Kury, Sebastian
    LaCroix, Andrea
    Laurie, Cathy C.
    Laurie, Cecelia A.
    Lemire, Mathiew
    Levine, David
    Ma, Jing
    Makar, Karen W.
    Qu, Conghui
    Taverna, Darin
    Ulrich, Cornelia M.
    Wu, Kana
    Kono, Suminori
    NATURE COMMUNICATIONS, 2015, 6
  • [35] Genome-wide association analyses in Han Chinese identify two new susceptibility loci for amyotrophic lateral sclerosis
    Deng, Min
    Wei, Ling
    Zuo, Xianbo
    Tian, Yanghua
    Xie, Fei
    Hu, Panpan
    Zhu, Chunyan
    Yu, Fengqiong
    Meng, Yu
    Wang, Honghao
    Zhang, Fangfang
    Ma, Huijuan
    Ye, Rong
    Cheng, Huaidong
    Du, Jing
    Dong, Wenwen
    Zhou, Shanshan
    Wang, Changqing
    Wang, Yu
    Wang, Jingye
    Chen, Xianwen
    Sun, Zhongwu
    Zhou, Nong
    Jiang, Yubao
    Liu, Xiuxiu
    Li, Xiaogang
    Zhang, Nan
    Liu, Na
    Guan, Yingjun
    Han, Yongsheng
    Han, Yongzhu
    Lv, Xinyi
    Fu, Yu
    Yu, Hui
    Xi, Chunhua
    Xie, Dandan
    Zhao, Qiyuan
    Xie, Peng
    Wang, Xin
    Zhang, Zhijun
    Shen, Lu
    Cui, Yong
    Yin, Xianyong
    Cheng, Hui
    Liang, Bo
    Zheng, Xiaodong
    Lee, Tatia M. C.
    Chen, Gang
    Zhou, Fusheng
    Veldink, Jan H.
    NATURE GENETICS, 2013, 45 (06) : 697 - +
  • [36] Variation in the Association Between Colorectal Cancer Susceptibility Loci and Colorectal Polyps by Polyp Type
    Burnett-Hartman, Andrea N.
    Newcomb, Polly A.
    Hutter, Carolyn M.
    Peters, Ulrike
    Passarelli, Michael N.
    Schwartz, Malaika R.
    Upton, Melissa P.
    Zhu, Lee-Ching
    Potter, John D.
    Makar, Karen W.
    AMERICAN JOURNAL OF EPIDEMIOLOGY, 2014, 180 (02) : 223 - 232
  • [37] Genome-wide association studies identify new melanoma susceptibility loci
    Tadeusz Dębniak
    Hereditary Cancer in Clinical Practice, 10 (Suppl 3)
  • [38] Author Correction: Genome-wide association analyses identify new Brugada syndrome risk loci and highlight a new mechanism of sodium channel regulation in disease susceptibility
    Julien Barc
    Rafik Tadros
    Charlotte Glinge
    David Y. Chiang
    Mariam Jouni
    Floriane Simonet
    Sean J. Jurgens
    Manon Baudic
    Michele Nicastro
    Franck Potet
    Joost A. Offerhaus
    Roddy Walsh
    Seung Hoan Choi
    Arie O. Verkerk
    Yuka Mizusawa
    Soraya Anys
    Damien Minois
    Marine Arnaud
    Josselin Duchateau
    Yanushi D. Wijeyeratne
    Alison Muir
    Michael Papadakis
    Silvia Castelletti
    Margherita Torchio
    Cristina Gil Ortuño
    Javier Lacunza
    Daniela F. Giachino
    Natascia Cerrato
    Raphaël P. Martins
    Oscar Campuzano
    Sonia Van Dooren
    Aurélie Thollet
    Florence Kyndt
    Andrea Mazzanti
    Nicolas Clémenty
    Arnaud Bisson
    Anniek Corveleyn
    Birgit Stallmeyer
    Sven Dittmann
    Johan Saenen
    Antoine Noël
    Shohreh Honarbakhsh
    Boris Rudic
    Halim Marzak
    Matthew K. Rowe
    Claire Federspiel
    Sophie Le Page
    Leslie Placide
    Antoine Milhem
    Hector Barajas-Martinez
    Nature Genetics, 2022, 54 : 735 - 735
  • [39] Association studies on 11 published colorectal cancer risk loci
    von Holst, S.
    Picelli, S.
    Edler, D.
    Lenander, C.
    Dalen, J.
    Hjern, F.
    Lundqvist, N.
    Lindforss, U.
    Pahlman, L.
    Smedh, K.
    Tornqvist, A.
    Holm, J.
    Janson, M.
    Andersson, M.
    Ekelund, S.
    Olsson, L.
    Ghazi, S.
    Papadogiannakis, N.
    Tenesa, A.
    Farrington, S. M.
    Campbell, H.
    Dunlop, M. G.
    Lindblom, A.
    BRITISH JOURNAL OF CANCER, 2010, 103 (04) : 575 - 580
  • [40] Association studies on 11 published colorectal cancer risk loci
    S von Holst
    S Picelli
    D Edler
    C Lenander
    J Dalén
    F Hjern
    N Lundqvist
    U Lindforss
    L Påhlman
    K Smedh
    A Törnqvist
    J Holm
    M Janson
    M Andersson
    S Ekelund
    L Olsson
    S Ghazi
    N Papadogiannakis
    A Tenesa
    S M Farrington
    H Campbell
    M G Dunlop
    A Lindblom
    British Journal of Cancer, 2010, 103 : 575 - 580