Isolation and characterization of twenty-one polymorphic microsatellite loci for Polycarpa aurata using third generation sequencing

被引:0
|
作者
Benjamin J. Wainwright
Irma S. Arlyza
Stephen A. Karl
机构
[1] University of Hawai‘i,Hawai‘i Institute of Marine Biology
[2] Mānoa,Research Center for Oceanography
[3] Indonesian Institute of Sciences,undefined
来源
关键词
Connectivity; Gene flow; Indonesia; Conservation;
D O I
暂无
中图分类号
学科分类号
摘要
Twenty-one microsatellite loci were developed for the tropical ascidian, Polycarpa aurata. Microsatellite enriched genomic libraries were constructed and sequenced using Pacific Biosciences single molecule real time sequencing technology. The 21 loci were characterized in 20 individuals from Alor, Indonesia. Observed levels of heterozygosity ranged from 0.30 to 1.00 with a mean of 8.2 alleles per locus. Loci PA21 and PA45 showed evidence of significant linkage disequilibrium and three loci significantly deviated from Hardy–Weinberg expectations.
引用
收藏
页码:671 / 673
页数:2
相关论文
共 50 条
  • [31] Characterization of twenty-four polymorphic microsatellite loci of Rasbora borapetensis
    Koizumi, Noriyuki
    Morioka, Shinsuke
    Mori, Atsushi
    Vongvichith, Bounsong
    Shibukawa, Koichi
    Nishida, Kazuya
    Watabe, Keiji
    Takemura, Takeshi
    CONSERVATION GENETICS RESOURCES, 2013, 5 (03) : 711 - 713
  • [32] Characterization of twenty-four polymorphic microsatellite loci of Rasbora borapetensis
    Noriyuki Koizumi
    Shinsuke Morioka
    Atsushi Mori
    Bounsong Vongvichith
    Koichi Shibukawa
    Kazuya Nishida
    Keiji Watabe
    Takeshi Takemura
    Conservation Genetics Resources, 2013, 5 : 711 - 713
  • [33] Isolation and Characterization of Novel Polymorphic Microsatellite Loci in Hippophae rhamnoides
    Islam M.A.
    Sinha P.
    Sharma S.S.
    Negi M.S.
    Tripathi S.B.
    Proceedings of the National Academy of Sciences, India Section B: Biological Sciences, 2017, 87 (3) : 727 - 732
  • [34] Isolation and characterization of polymorphic microsatellite loci from Silurus Lanzhouensis
    Yuan-Hao Yang
    Feng Wang
    Lv-Zhou Wang
    Lei Li
    Juan-Ning Yang
    Yang Li
    Conservation Genetics Resources, 2014, 6 : 979 - 981
  • [35] Isolation and characterization of novel polymorphic microsatellite loci in Perinereis aibuhitensis
    Liu, Y.
    Yu, D.
    Wang, Q.
    Liu, H.
    Guan, S.
    Liu, M.
    GENETICS AND MOLECULAR RESEARCH, 2016, 15 (01)
  • [36] Isolation and characterization of fourteen polymorphic microsatellite loci for Odontobutis sinensis
    Ping Qiu
    Xuefen Yang
    Kai-Jian Wei
    Zhihong Ma
    Ruibin Yang
    Conservation Genetics Resources, 2014, 6 : 711 - 713
  • [37] Isolation and characterization of six polymorphic microsatellite loci in Aspergillus niger
    Esteban, A
    Leong, SLL
    Tran-Dinh, N
    MOLECULAR ECOLOGY NOTES, 2005, 5 (02): : 375 - 377
  • [38] ISOLATION AND CHARACTERIZATION OF POLYMORPHIC MICROSATELLITE LOCI IN SELLIERA RADICANS (GOODENIACEAE)
    Pilkington, Kay M.
    Symonds, V. Vaughan
    APPLICATIONS IN PLANT SCIENCES, 2016, 4 (06):
  • [39] Isolation and characterization of polymorphic microsatellite loci in Achnatherum sibiricum (Poaceae)
    Na Chen
    Yang Yang
    Chun-Jie Li
    Zhi-Biao Nan
    Conservation Genetics, 2008, 9 : 1699 - 1701
  • [40] Isolation and characterization of 16 polymorphic microsatellite loci for Euchiloglanis kishinouyei
    Li, Y.
    Wang, J.
    Zhao, K.
    Xie, B.
    Peng, Z.
    JOURNAL OF FISH BIOLOGY, 2014, 85 (03) : 972 - 977