Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut

被引:0
|
作者
Jean-Christophe Lagier
Saber Khelaifia
Esam Ibraheem Azhar
Olivier Croce
Fehmida Bibi
Asif Ahmad Jiman-Fatani
Muhammad Yasir
Huda Ben Helaby
Catherine Robert
Pierre-Edouard Fournier
Didier Raoult
机构
[1] Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes,Department of Medical Laboratory Technology
[2] UM 63,Department of Medical Microbiology and Parasitology
[3] CNRS 7278,undefined
[4] L’Institut de Recherche pour le Développement 198,undefined
[5] Inserm 1095,undefined
[6] Institut Hospitalo-Universitaire Méditerranée-Infection,undefined
[7] Faculté de Médecine,undefined
[8] Aix-Marseille Université,undefined
[9] Special Infectious Agents Unit,undefined
[10] King Fahd Medical Research Center,undefined
[11] King Abdulaziz University,undefined
[12] Faculty of Applied Medical Sciences,undefined
[13] King Abdulaziz University,undefined
[14] Faculty of Medicine,undefined
[15] King Abdulaziz University,undefined
关键词
Genome; Halophilic bacteria; Human gut; Culturomics;
D O I
暂无
中图分类号
学科分类号
摘要
Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1T, whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb).
引用
下载
收藏
相关论文
共 50 条
  • [41] Draft Genome Sequence of Halomonas sp Strain KM-1, a Moderately Halophilic Bacterium That Produces the Bioplastic Poly(3-Hydroxybutyrate)
    Kawata, Yoshikazu
    Kawasaki, Kazunori
    Shigeri, Yasushi
    JOURNAL OF BACTERIOLOGY, 2012, 194 (10) : 2738 - 2739
  • [42] Virgibacillus senegalensis sp. nov., a new moderately halophilic bacterium isolated from human gut
    Seck, E.
    Rathored, J.
    Khelaifia, S.
    Croce, O.
    Robert, C.
    Couderc, C.
    Di Pinto, F.
    Sokhna, C.
    Raoult, D.
    Lagier, J-C
    NEW MICROBES AND NEW INFECTIONS, 2024, 59
  • [43] Genome Sequence of Lactobacillus fermentum Strain MTCC 8711, a Probiotic Bacterium Isolated from Yogurt
    Jayashree, Sathyanarayanan
    Pooja, Sharma
    Pushpanathan, Muthuirulan
    Vishnu, Udayakumar
    Sankarasubramanian, Jagadesan
    Rajendhran, Jeyaprakash
    Gunasekaran, Paramasamy
    GENOME ANNOUNCEMENTS, 2013, 1 (05)
  • [44] Draft Genome Sequence of Rhizobium sp Strain PDO1-076, a Bacterium Isolated from Populus deltoides
    Brown, Steven D.
    Klingeman, Dawn M.
    Lu, Tse-Yuan S.
    Johnson, Courtney M.
    Utturkar, Sagar M.
    Land, Miriam L.
    Schadt, Christopher W.
    Doktycz, Mitchel J.
    Pelletier, Dale A.
    JOURNAL OF BACTERIOLOGY, 2012, 194 (09) : 2383 - 2384
  • [45] Draft Genome Sequence of Probiotic Lactobacillus acidophilus Strain L-55 Isolated from a Healthy Human Gut
    Fujii, Yusuke
    Toh, Hidehiro
    Matsubara, Takehiro
    Tomida, Shuta
    Co Thi Kim Nguyen
    Mimura, Iyo
    Nakamura, Shoji
    Morita, Hidetoshi
    GENOME ANNOUNCEMENTS, 2016, 4 (06)
  • [46] Complete Genome Sequence of Clostridium septicum Strain CSUR P1044, Isolated from the Human Gut Microbiota
    Benamar, Samia
    Cassir, Nadim
    Caputo, Aurelia
    Cadoret, Frederic
    La Scola, Bernard
    GENOME ANNOUNCEMENTS, 2016, 4 (05)
  • [47] Genome Sequence of Hafnia alvei bta3_1, a Bacterium with Antimicrobial Properties Isolated from Honey Bee Gut
    Tian, Baoyu
    Moran, Nancy A.
    GENOME ANNOUNCEMENTS, 2016, 4 (03)
  • [48] Complete Genome Sequence of Brucella abortus 134, a Biovar 1 Strain Isolated from Human
    Wang, Yufei
    Ke, Yuehua
    Gao, Guangjun
    Zhen, Qing
    Yuan, Xitong
    Wang, Zhoujia
    Xu, Jie
    Li, Tiefeng
    Wang, Dali
    Huang, Liuyu
    Xu, Xingran
    Chen, Zeliang
    JOURNAL OF BACTERIOLOGY, 2012, 194 (23) : 6658 - 6658
  • [49] Complete Genome Sequence of Anaerostipes caccae Strain L1-92T, a Butyrate-Producing Bacterium Isolated from Human Feces
    Morinaga, Kana
    Kusada, Hiroyuki
    Watanabe, Miho
    Tamaki, Hideyuki
    MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2021, 10 (16):
  • [50] Draft Genome Sequence of the First NDM-1-Producing Providencia stuartii Strain Isolated in Portugal
    Manageiro, Vera
    Sampaio, Daniel A.
    Pereira, Patricia
    Rodrigues, Paulo
    Vieira, Luis
    Palos, Carlos
    Canica, Manuela
    GENOME ANNOUNCEMENTS, 2015, 3 (05)