Genome sequence of Oceanobacillus picturae strain S1, an halophilic bacterium first isolated in human gut

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作者
Jean-Christophe Lagier
Saber Khelaifia
Esam Ibraheem Azhar
Olivier Croce
Fehmida Bibi
Asif Ahmad Jiman-Fatani
Muhammad Yasir
Huda Ben Helaby
Catherine Robert
Pierre-Edouard Fournier
Didier Raoult
机构
[1] Unité de Recherche sur les Maladies Infectieuses et Tropicales Emergentes,Department of Medical Laboratory Technology
[2] UM 63,Department of Medical Microbiology and Parasitology
[3] CNRS 7278,undefined
[4] L’Institut de Recherche pour le Développement 198,undefined
[5] Inserm 1095,undefined
[6] Institut Hospitalo-Universitaire Méditerranée-Infection,undefined
[7] Faculté de Médecine,undefined
[8] Aix-Marseille Université,undefined
[9] Special Infectious Agents Unit,undefined
[10] King Fahd Medical Research Center,undefined
[11] King Abdulaziz University,undefined
[12] Faculty of Applied Medical Sciences,undefined
[13] King Abdulaziz University,undefined
[14] Faculty of Medicine,undefined
[15] King Abdulaziz University,undefined
关键词
Genome; Halophilic bacteria; Human gut; Culturomics;
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摘要
Oceanobacillus picturae is a strain of a moderately halophilic bacterium, first isolated from a mural painting. We demonstrate, for the first time, the culture of human Oceanobacillus picturae, strain S1T, whose genome is described here, from a stool sample collected from a 25-year-old Saoudian healthy individual. We used a slightly modified standard culture medium adding 100 g/L of NaCl. We provide a short description of this strain including its MALDI-TOF spectrum, the main identification tool currently used in clinical microbiology. The 3,675,175 bp long genome exhibits a G + C content of 39.15 % and contains 3666 protein-coding and 157 RNA genes. The draft genome sequence of Oceanobacillus picturae has a similar size to the Oceanobacillus kimchii (respectively 3.67 Mb versus 3.83 Mb). The G + C content was higher compared with Oceanobacillus kimchii (respectively 39.15 % and 35.2 %). Oceanobacillus picturae shared almost identical number of genes (3823 genes versus 3879 genes), with a similar ratio of genes per Mb (1041 genes/Mb versus 1012 genes/Mb).
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