The complete chloroplast genome of Actinidia macrosperma

被引：5
|
作者：
Chen, Yi [1 ]
Xu, Yiqing [2 ]
Zhang, Kai [3 ]
Song, Yanlin [4 ]
He, Qiuyu [5 ]
Qian, Qiuyu [3 ]
Xu, Jian [6 ]
机构：
[1] Sun Nanjing Automat Equipments Co Ltd, Nanjing, Jiangsu, Peoples R China
[2] Nanjing Forestry Univ, Coll Informat Sci & Technol, Nanjing, Jiangsu, Peoples R China
[3] Nanjing Visiable Informat Technol Co Ltd, Nanjing, Jiangsu, Peoples R China
[4] Shandong Agr & Engn Univ, Jinan, Shandong, Peoples R China
[5] Nanjing XiaoZhuang Univ, Nanjing, Jiangsu, Peoples R China
[6] Nanjing Muzhou Software Co Ltd, Nanjing, Jiangsu, Peoples R China
来源：
MITOCHONDRIAL DNA PART B-RESOURCES | 2019年 / 4卷 / 02期
关键词：
Actinidia macrosperma; chloroplast genome; assembly; phylogenetic analysis; SEQUENCE;
D O I：
10.1080/23802359.2019.1692733
中图分类号：
Q3 [遗传学];
学科分类号：
071007 ; 090102 ;
摘要：
Actinidia macrosperma (A. macrosperma) is a medicinal plant in China, which has been well known for its activities against leprosy and cancers. In this study, we assembled and characterized the complete chloroplast (cp) genome sequence of A. macrosperma in an effort to provide genomic resources for promoting its conservation. The cp genome is 156,231 bp in length, containing a pair of 23,720 bp inverted repeat (IR) regions, which is separated by a large single copy region (LSC) of 88,214 bp and a small single copy region (SSC) of 20,577 bp. A total of 132 genes were annotated in this cp genome, including 85 protein-coding genes, 39 tRNA genes, and 8 rRNA genes. Phylogenetic analysis highly supported that A. macrosperma was evolutionarily close to another Actinidia species Actinidia deliciosa.
引用
收藏
页码：4188 / 4189
页数：2
相关论文
共 50 条
  • [21] The complete chloroplast genome sequence of Actinidia arguta using the PacBio RS II platform
    Lin, Miaomiao
    Qi, Xiujuan
    Chen, Jinyong
    Sun, Leiming
    Zhong, Yunpeng
    Fang, Jinbao
    Hu, Chungen
    PLOS ONE, 2018, 13 (05):
  • [22] Comparison of waterlogging tolerance between Actinidia macrosperma and Actinidia deliciosa
    Beppu, K.
    Ogihara, Y.
    Ohtani, M.
    Kataoka, I.
    X INTERNATIONAL SYMPOSIUM ON KIWIFRUIT, 2022, 1332 : 219 - 226
  • [23] Immunomodulatory activity of aqueous extract of Actinidia macrosperma
    Lu, Yin
    Fan, Jie
    Zhao, Yunpeng
    Chen, Shaoyuan
    Zheng, Xiaodong
    Yin, Yuanming
    Fu, Chengxin
    ASIA PACIFIC JOURNAL OF CLINICAL NUTRITION, 2007, 16 : 261 - 265
  • [24] ORGANIZATION OF THE CHLOROPLAST GENOME OF KIWIFRUIT (ACTINIDIA-DELICIOSA)
    HUDSON, KR
    GARDNER, RC
    CURRENT GENETICS, 1988, 13 (04) : 339 - 342
  • [25] The complete choloroplast genome sequence of Actinidia lanceolate
    Zhang, Junlin
    Liu, Huanhuan
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1187 - 1188
  • [26] The complete chloroplast genome sequence of Actinidia chinensis Planch. 'Hongyang', a typical red core pulp in China
    Liu, Xia
    Sun, Chong
    Li, Mingzhi
    Liu, Jing
    Zhang, Wenlin
    Liu, Ran
    Liu, Yiqing
    Le, Youzhang
    Lan, Jianbin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2022, 7 (04): : 593 - 595
  • [27] Complete Chloroplast Genome of Sedum sarmentosum and Chloroplast Genome Evolution in Saxifragales
    Dong, Wenpan
    Xu, Chao
    Cheng, Tao
    Zhou, Shiliang
    PLOS ONE, 2013, 8 (10):
  • [28] The complete chloroplast genome of Phoebe zhennan
    Liu, Dan
    Liu, Dingkun
    Li, Minghe
    Chen, Shipin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2019, 4 (01): : 1564 - 1565
  • [29] The complete chloroplast genome of Angelica nitida
    Deng, Yi-Qi
    Wen, Jun
    Yu, Yan
    He, Xing-Jin
    MITOCHONDRIAL DNA PART B-RESOURCES, 2017, 2 (02): : 694 - 695
  • [30] The complete chloroplast genome of a Woodwardia japonica
    Ramekar, Rahul Vasudeo
    Choi, Ik-Young
    Cheong, Eun Ju
    Kwak, Myounghai
    Park, Kyong-Cheul
    MITOCHONDRIAL DNA PART B-RESOURCES, 2020, 5 (01): : 102 - 103
12345