De novo assembly and characterisation of the transcriptome of the Beringian pseudoscorpion

被引:2
|
作者
Lebenzon, Jacqueline E. [1 ]
Toxopeus, Jantina [1 ,2 ]
Anthony, Susan E. [1 ]
Sinclair, Brent J. [1 ]
机构
[1] Univ Western Ontario, Dept Biol, 1151 Richmond St N, London, ON N6A 3K7, Canada
[2] St Francis Xavier Univ, Biol Dept, 2321 Notre Dame Ave, Antigonish, NS B2G 2W5, Canada
来源
CANADIAN ENTOMOLOGIST | 2021年 / 153卷 / 03期
基金
加拿大自然科学与工程研究理事会;
关键词
HEAT-SHOCK PROTEINS; SPIDER-VENOM; RNA-SEQ; DEHYDRATION STRESS; ANTARCTIC MITE; LIFE-HISTORY; GENOME; ROLES; UNDERPINNINGS; DEGRADATION;
D O I
10.4039/tce.2021.2
中图分类号
Q96 [昆虫学];
学科分类号
摘要
Pseudoscorpions are microarthropods that are distributed from the equator to beyond the Arctic circle. Wyochernes asiaticus (Arachnida: Pseudoscorpiones: Chernetidae) is the northernmost species of pseudoscorpion and is broadly distributed in Beringia, an Arctic and sub-Arctic region that remained unglaciated during the last glacial maximum. Wyochernes asiaticus is anoxia tolerant and has moderate cold tolerance, but nothing is known about the molecular basis of their survival in Canadian polar environments. We de novo assembled and characterised the transcriptome of W. asiaticus collected from the Yukon Territory in northwestern Canada. We assembled an approximately 62.6-million base-pair transcriptome with a mean contig length of 1277, which was 76% complete, according to a benchmark universal single copy orthologue (BUSCO) analysis. We identified 1100 transcripts encoding proteins associated with stress tolerance in these pseudoscorpions, including heat shock proteins, antioxidants, ubiquitination and proteosomal proteins, and sirtuins. We also identified transcripts encoding putative venom proteins. We highlight eight transcripts with high sequence similarity to sequences of venom proteins (ctenitoxins and agatoxins) described from other pseudoscorpions. Our study yields the first transcriptome of a Beringian arthropod, providing important sequence information that will allow future investigation of how W. asiaticus survives in Canadian polar environments.
引用
收藏
页码:301 / 313
页数:13
相关论文
共 50 条
  • [21] De novo assembly and annotation of the Acropora gemmifera transcriptome
    Oldach, Matthew J.
    Vize, Peter D.
    MARINE GENOMICS, 2018, 40 : 9 - 12
  • [22] A simple guide to de novo transcriptome assembly and annotation
    Raghavan, Venket
    Kraft, Louis
    Mesny, Fantin
    Rigerte, Linda
    BRIEFINGS IN BIOINFORMATICS, 2022, 23 (02)
  • [23] De Novo Assembly and Characterization of the Xenocatantops brachycerus Transcriptome
    Zhao, Le
    Zhang, Xinmei
    Qiu, Zhongying
    Huang, Yuan
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2018, 19 (02)
  • [24] TransPi-a comprehensive TRanscriptome ANalysiS PIpeline for de novo transcriptome assembly
    Rivera-Vicens, Ramon E.
    Garcia-Escudero, Catalina A.
    Conci, Nicola
    Eitel, Michael
    Woerheide, Gert
    MOLECULAR ECOLOGY RESOURCES, 2022, 22 (05) : 2070 - 2086
  • [25] De novo transcriptome assembly of Setatria italica variety Taejin
    Jo, Yeonhwa
    Lian, Sen
    Cho, Jin Kyong
    Choi, Hoseong
    Kim, Sang-Min
    Kim, Sun-Lim
    Lee, Bong Choon
    Cho, Won Kyong
    GENOMICS DATA, 2016, 8 : 121 - 122
  • [26] De novo transcriptome assembly for the spiny mouse (Acomys cahirinus)
    Mamrot, Jared
    Legaie, Roxane
    Ellery, Stacey J.
    Wilson, Trevor
    Seemann, Torsten
    Powell, David R.
    Gardner, David K.
    Walker, David W.
    Temple-Smith, Peter
    Papenfuss, Anthony T.
    Dickinson, Hayley
    SCIENTIFIC REPORTS, 2017, 7
  • [27] De Novo Assembly of the Transcriptome of Turritopsis, a Jellyfish That Repeatedly Rejuvenates
    Hasegawa, Yoshinori
    Watanabe, Takashi
    Takazawa, Masaki
    Ohara, Osamu
    Kubota, Shin
    ZOOLOGICAL SCIENCE, 2016, 33 (04) : 366 - 371
  • [28] Sequencing and de novo assembly of a Dahlia hybrid cultivar transcriptome
    Lehnert, Erik M.
    Walbot, Virginia
    FRONTIERS IN PLANT SCIENCE, 2014, 5
  • [29] De novo transcriptome assembly of two different apricot cultivars
    Jo, Yeonhwa
    Lian, Sen
    Cho, Jin Kyong
    Choi, Hoseong
    Chu, Hyosub
    Cho, Won Kyong
    GENOMICS DATA, 2015, 6 : 275 - +
  • [30] De novo sequencing and assembly of Azadirachta indica fruit transcriptome
    Krishnan, Neeraja M.
    Pattnaik, Swetansu
    Deepak, S. A.
    Hariharan, Arun K.
    Gaur, Prakhar
    Chaudhary, Rakshit
    Jain, Prachi
    Vaidyanathan, Srividya
    Krishna, P. G. Bharath
    Panda, Binay
    CURRENT SCIENCE, 2011, 101 (12): : 1553 - 1561