High-throughput, large-scale SNP genotyping: Bioinformatics considerations

被引：0
|
作者：
Margetic, N [1 ]
机构：
[1] Ctr Natl Genotypage, F-91057 Evry, France
来源：
ITI 2004: PROCEEDINGS OF THE 26TH INTERNATIONAL CONFERENCE ON INFORMATION TECHNOLOGY INTERFACES | 2004年
关键词：
computing; biology; genotyping;
D O I：
暂无
中图分类号：
TP18 [人工智能理论];
学科分类号：
081104 ; 0812 ; 0835 ; 1405 ;
摘要：
In order to provide a high throughput, large-scale genotyping facility at the national level we have developed a set of interdependent information systems. A combination of commercial, publicly-available and in-house developed tools links a series of data repositories based both on flat files and relational databases providing an almost complete semi-automated pipeline.
引用
收藏
页码：41 / 46
页数：6
相关论文
共 50 条
  • [21] High-throughput solution processing of large-scale graphene
    Tung, Vincent C.
    Allen, Matthew J.
    Yang, Yang
    Kaner, Richard B.
    NATURE NANOTECHNOLOGY, 2009, 4 (01) : 25 - 29
  • [22] Identification of Canadian barley varieties by high-throughput SNP genotyping
    Leea, Sung -Jong
    Eckhardta, Maria
    Dusabenyagasania, Mathieu
    Izydorczyka, Marta
    Demekea, Tigst
    Perrya, Daniel
    Walkowiak, Sean
    CANADIAN JOURNAL OF PLANT SCIENCE, 2024, 104 (04) : 388 - 393
  • [23] A high-throughput SNP genotyping method with PCR on magnetic nanoparticles
    He, Nongyue
    Li, Song
    Liu, Hongna
    He, Quanguo
    Wang, Zhifei
    Guo, Yafei
    Tang, Jianxin
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2007, 233 : 19 - 19
  • [24] Infinium Assay for Large-scale SNP Genotyping Applications
    Adler, Adam J.
    Wiley, Graham B.
    Gaffney, Patrick M.
    JOVE-JOURNAL OF VISUALIZED EXPERIMENTS, 2013, (81):
  • [25] High-throughput SNP genotyping method with PCR on magnetic nanoparticles
    Liu Hong-Na
    Li Song
    Wang Zhi-Fei
    He Nong-Yue
    He Quan-Guo
    CHEMICAL JOURNAL OF CHINESE UNIVERSITIES-CHINESE, 2007, 28 (06): : 1035 - 1038
  • [26] A Large-Scale High-Throughput Screen for Modulators of SERCA Activity
    Bidwell, Philip A. A.
    Yuen, Samantha L. L.
    Li, Ji
    Berg, Kaja
    Rebbeck, Robyn T. T.
    Aldrich, Courtney C. C.
    Roopnarine, Osha
    Cornea, Razvan L. L.
    Thomas, David D. D.
    BIOMOLECULES, 2022, 12 (12)
  • [27] High-throughput genotyping assay for the large-scale genetic characterization of Cryptosporidium parasites from human and bovine samples
    Abal-Fabeiro, J. L.
    Maside, X.
    Llovo, J.
    Bello, X.
    Torres, M.
    Trevino, M.
    Moldes, L.
    Munoz, A.
    Carracedo, A.
    Bartolome, C.
    PARASITOLOGY, 2014, 141 (04) : 491 - 500
  • [28] Reliability of high-throughput genotyping of whole genome amplified DNA in SNP genotyping studies
    Berthier-Schaad, Yvette
    Kao, Wen Hong Linda
    Coresh, Josef
    Zhang, Lin
    Ingersoll, Roxann G.
    Stephens, Robert
    Smith, Michael W.
    ELECTROPHORESIS, 2007, 28 (16) : 2812 - 2817
  • [29] Evaluation of Nanofluidics Technology for High-Throughput SNP Genotyping in a Clinical Setting
    Chan, Maurice
    Chan, Mei Wen
    Loh, Ting Wei
    Law, Hai Yang
    Yoon, Chui Sheun
    Than , Sint Sint
    Chua, Jia Mei
    Wong, Chow Yin
    Yong, Wei Sean
    Yap, Yoon Sim
    Ho, Gay Hui
    Ang, Peter
    Lee, Ann Siew Gek
    JOURNAL OF MOLECULAR DIAGNOSTICS, 2011, 13 (03): : 305 - 312
  • [30] SNP high-throughput screening in grapevine using the SNPlex™ genotyping system
    Pindo, Massimo
    Vezzulli, Silvia
    Coppola, Giuseppina
    Cartwright, Dustin A.
    Zharkikh, Andrey
    Velasco, Riccardo
    Troggio, Michela
    BMC PLANT BIOLOGY, 2008, 8 (1)
12345