Identification of Canadian barley varieties by high-throughput SNP genotyping

被引:0
|
作者
Leea, Sung -Jong [1 ]
Eckhardta, Maria [1 ]
Dusabenyagasania, Mathieu [1 ]
Izydorczyka, Marta [1 ,2 ]
Demekea, Tigst [1 ]
Perrya, Daniel [1 ]
Walkowiak, Sean [1 ,2 ]
机构
[1] Canadian Grain Commiss, Winnipeg, MB, Canada
[2] Univ Manitoba, Winnipeg, MB, Canada
关键词
DNA; barley; variety; genotyping; Canada; HORDEUM-VULGARE; MAP; QUALITY; MARKERS; GENES;
D O I
10.1139/CJPS-2023-0187
中图分类号
S3 [农学(农艺学)];
学科分类号
0901 ;
摘要
Barley is a major grain crop in Canada and is used for generating malt, in addition to being used as human food and animal feed. Differentiating barley varieties is important for malt quality assurance and grain handling. Here, we present a DNAbased testing method for the identification of Canadian barley varieties. The method uses 24 custom TaqMan genotyping assays, which are analyzed using the high -throughput SmartChip system (Takara Bio Inc.). Using this method, we are able to distinguish 124 barley varieties commonly grown in Canada.
引用
收藏
页码:388 / 393
页数:6
相关论文
共 50 条
  • [1] Development and implementation of high-throughput SNP genotyping in barley
    Timothy J Close
    Prasanna R Bhat
    Stefano Lonardi
    Yonghui Wu
    Nils Rostoks
    Luke Ramsay
    Arnis Druka
    Nils Stein
    Jan T Svensson
    Steve Wanamaker
    Serdar Bozdag
    Mikeal L Roose
    Matthew J Moscou
    Shiaoman Chao
    Rajeev K Varshney
    Péter Szűcs
    Kazuhiro Sato
    Patrick M Hayes
    David E Matthews
    Andris Kleinhofs
    Gary J Muehlbauer
    Joseph DeYoung
    David F Marshall
    Kavitha Madishetty
    Raymond D Fenton
    Pascal Condamine
    Andreas Graner
    Robbie Waugh
    BMC Genomics, 10
  • [2] Development and implementation of high-throughput SNP genotyping in barley
    Close, Timothy J.
    Bhat, Prasanna R.
    Lonardi, Stefano
    Wu, Yonghui
    Rostoks, Nils
    Ramsay, Luke
    Druka, Arnis
    Stein, Nils
    Svensson, Jan T.
    Wanamaker, Steve
    Bozdag, Serdar
    Roose, Mikeal L.
    Moscou, Matthew J.
    Chao, Shiaoman
    Varshney, Rajeev K.
    Szuecs, Peter
    Sato, Kazuhiro
    Hayes, Patrick M.
    Matthews, David E.
    Kleinhofs, Andris
    Muehlbauer, Gary J.
    DeYoung, Joseph
    Marshall, David F.
    Madishetty, Kavitha
    Fenton, Raymond D.
    Condamine, Pascal
    Graner, Andreas
    Waugh, Robbie
    BMC GENOMICS, 2009, 10
  • [3] High-throughput SNP genotyping
    Jenkins, S
    Gibson, N
    COMPARATIVE AND FUNCTIONAL GENOMICS, 2002, 3 (01): : 57 - 66
  • [4] Evaluation of two high-throughput genotyping systems for rapid identification of Canadian wheat varieties
    Lee, Sung-Jong
    Demeke, Tigst
    Dusabenyagasani, Mathieu
    Saydak, Danny
    Perry, Daniel
    Walkowiak, Sean
    CANADIAN JOURNAL OF PLANT SCIENCE, 2023, 103 (04) : 422 - 425
  • [5] High-throughput SNP genotyping with the Masscode system
    Kokoris, M
    Dix, K
    Moynihan, K
    Mathis, J
    Erwin, B
    Grass, P
    Hines, B
    Duesterhoeft, A
    MOLECULAR DIAGNOSIS, 2000, 5 (04): : 329 - 340
  • [6] High-throughput SNP Genotyping With the Masscode System
    Mark Kokoris
    Kim Dix
    Kristen Moynihan
    Janette Mathis
    Barb Erwin
    Paul Grass
    Brian Hines
    Andreas Duesterhoeft
    Molecular Diagnosis, 2000, 5 (4) : 329 - 340
  • [7] High-throughput SNP genotyping by SBE/SBH
    Mindoiu, Ion I.
    Prajescu, Claudia
    COMPUTATIONAL SCIENCE - ICCS 2006, PT 2, PROCEEDINGS, 2006, 3992 : 742 - 749
  • [8] High-throughput SNP genotyping by SBE/SBH
    Mandoiu, Ion I.
    Prajescu, Claudia
    IEEE TRANSACTIONS ON NANOBIOSCIENCE, 2007, 6 (01) : 28 - 35
  • [9] High-throughput SNP genotyping on universal bead arrays
    Shen, R
    Fan, JB
    Campbell, D
    Chang, WH
    Chen, J
    Doucet, D
    Yeakley, J
    Bibikova, M
    Garcia, EW
    McBride, C
    Steemers, F
    Garcia, F
    Kermani, BG
    Gunderson, K
    Oliphant, A
    MUTATION RESEARCH-FUNDAMENTAL AND MOLECULAR MECHANISMS OF MUTAGENESIS, 2005, 573 (1-2) : 70 - 82
  • [10] High-throughput SNP genotyping with the GoldenGate assay in maize
    Yan, Jianbing
    Yang, Xiaohong
    Shah, Trushar
    Sanchez-Villeda, Hector
    Li, Jiansheng
    Warburton, Marilyn
    Zhou, Yi
    Crouch, Jonathan H.
    Xu, Yunbi
    MOLECULAR BREEDING, 2010, 25 (03) : 441 - 451