Biomolecular NMR data analysis

被引：10

作者：

Gryk, Michael R. ^{[1
]}

Vyas, Jay ^{[1
]}

Maciejewski, Mark W. ^{[1
]}

机构：

[1] Univ Connecticut, Ctr Hlth, Dept Mol Microbial & Struct Biol, Farmington, CT 06030 USA

来源：

PROGRESS IN NUCLEAR MAGNETIC RESONANCE SPECTROSCOPY | 2010年 / 56卷 / 04期

基金：

美国国家卫生研究院;

关键词：

Biomolecular NMR; Data model; Pulse sequence; Non-uniform sampling; Hyper-dimensional spectrum; DNA-POLYMERASE-BETA; LINEAR-PREDICTION EXTRAPOLATION; MAXIMUM-ENTROPY RECONSTRUCTION; FILTER DIAGONALIZATION METHOD; PROTEIN SECONDARY STRUCTURE; NUCLEAR-MAGNETIC-RESONANCE; MULTIDIMENSIONAL NMR; CHEMICAL-SHIFT; FOURIER-TRANSFORM; 3-WAY DECOMPOSITION;

D O I：

10.1016/j.pnmrs.2010.02.002

中图分类号：

O64 [物理化学（理论化学）、化学物理学];

学科分类号：

070304 ; 081704 ;

摘要：

The review of Progress in Nuclear Magnetic Resonance Spectroscopy informs about biomolecular NMR data analysis. It focuses on the use of software tools for processing and analyzing NMR data for determining the three-dimensional structures of proteins and characterizing other biophysical properties of these macromolecules. The NMR data processing pipeline consists of several distinct phases, such as Spectral Acquisition (SQ), Spectral Reconstruction (SR), Spectral Analysis (SA), and Biophysical Characterization (BC). The modular approach to data analysis also allows the user to preprocess each individual spectrum in a manner that is appropriate to its acquisition details. It is required to attain high sensitivity and resolution in an effort to analyze complex NMR data generated from bio-molecules.

引用

页码：329 / 345

页数：17

共 50 条

[21] Journal of Biomolecular NMR: Editorial
Palmer, Art
[J]. JOURNAL OF BIOMOLECULAR NMR, 2022, 76 (1-2) : 1 - 1
[22] RECENT PROGRESS IN BIOMOLECULAR NMR
[J]. 波谱学杂志, 2002, (01) : 77 - 77
[23] Integrative NMR for biomolecular research
Woonghee Lee
Gabriel Cornilescu
Hesam Dashti
Hamid R. Eghbalnia
Marco Tonelli
William M. Westler
Samuel E. Butcher
Katherine A. Henzler-Wildman
John L. Markley
[J]. Journal of Biomolecular NMR, 2016, 64 : 307 - 332
[24] Journal of Biomolecular NMR: Editorial
Art Palmer
[J]. Journal of Biomolecular NMR, 2022, 76 : 1 - 1
[25] Biomolecular NMR: Past and future
Markley, John L.
Westler, William Milo
[J]. ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, 2017, 628 : 3 - 16
[26] Automation of biomolecular NMR screening
Ross, A
Senn, H
[J]. CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2003, 3 (01) : 55 - 67
[27] Introduction: Biomolecular NMR Spectroscopy
Gronenborn, Angela M.
Polenova, Tatyana
[J]. CHEMICAL REVIEWS, 2022, 122 (10) : 9265 - 9266
[28] relax: the analysis of biomolecular kinetics and thermodynamics using NMR relaxation dispersion data (vol 35, pg 4205, 2019)
Morin, Sebastien
Linnet, Troels E.
Lescanne, Mathilde
Schanda, Paul
Thompson, Gary S.
Tollinger, Martin
Teilum, Kaare
Gagne, Stephane
Marion, Dominique
Griesinger, Christian
Blackledge, Martin
d'Auvergne, Edward J.
[J]. BIOINFORMATICS, 2019, 35 (20) : 4205 - 4205
[29] Structures of Biomolecular Complexes from Heterogeneous Data and Bayesian Data Analysis
Nilges, Michael
Bouvier, Guillaume
Batista, Paulo R.
Spill, Yannick
[J]. BIOPHYSICAL JOURNAL, 2013, 104 (02) : 376A - 376A
[30] A guide to the visual analysis and communication of biomolecular structural data
Graham T. Johnson
Samuel Hertig
[J]. Nature Reviews Molecular Cell Biology, 2014, 15 : 690 - 698

← 1 2 3 4 5 →