Effect of double-stranded DNA on electrical double layer structure at oxide/electrolyte interface in classical molecular dynamics simulation

被引:12
|
作者
Maekawa, Yuki [1 ]
Shibuta, Yasushi [1 ]
Sakata, Toshiya [1 ]
机构
[1] Univ Tokyo, Sch Engn, Dept Mat Engn, Bunkyo Ku, Tokyo 1138656, Japan
基金
日本科学技术振兴机构;
关键词
FIELD-EFFECT TRANSISTOR; SINGLE NUCLEOTIDE POLYMORPHISM; INITIO FORCE-FIELD; SEMICONDUCTOR-DEVICE; SURFACE; TEMPERATURE; LIMITATIONS; MECHANISM; CHARGES;
D O I
10.1016/j.cplett.2014.11.068
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
The elucidation of the electrical double layer (EDL) structure including biomolecules is helpful in controlling biointerfacial functions in biosensing devices. In this study, the effect of double-stranded DNA (ds-DNA) on the EDL structure at the SiO2/NaClaq interface in a concentrated solution was investigated by classical molecular dynamics (MD) simulation. In 1.0 M NaClaq, negatively charged ds-DNA shielded electrically by cations did not affect the potential profile of the EDL structure. This finding indicates that the simulated bio-interfacial structure allows the detection of ionic charges adsorbed directly onto substrates in a concentrated solution regardless of the presence of shielded biomolecular charges. (C) 2014 Elsevier B.V. All rights reserved.
引用
收藏
页码:152 / 157
页数:6
相关论文
共 50 条
  • [21] Dynamics of the Buckling Transition in Double-Stranded DNA and RNA
    Ott, Katharina
    Martini, Linda
    Lipfert, Jan
    Gerland, Ulrich
    BIOPHYSICAL JOURNAL, 2020, 118 (07) : 1690 - 1701
  • [22] Dynamics of a double-stranded DNA segment in a shear flow
    Panja, Debabrata
    Barkema, Gerard T.
    van Leeuwen, J. M. J.
    PHYSICAL REVIEW E, 2016, 93 (04)
  • [23] The dynamics of intermittent strand separation in double-stranded DNA
    Chatterjee, Debarati
    Chaudhury, Srabanti
    Cherayil, Binny J.
    JOURNAL OF CHEMICAL PHYSICS, 2007, 127 (15):
  • [24] DYNAMICS OF DOUBLE-STRANDED DNA REPTATION FROM BACTERIOPHAGE
    GABASHVILI, IS
    GROSBERG, AY
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 1992, 9 (05): : 911 - 920
  • [25] DIFFERENTIAL CAPACITY AND STRUCTURE OF THE ELECTRICAL DOUBLE LAYER AT THE MERCURY ELECTROLYTE INTERFACE
    DAMASKIN, BB
    RUSSIAN CHEMICAL REVIEWS, 1961, 30 (02): : 78 - 90
  • [26] Coarse-Grained Molecular Dynamics Model of Double-Stranded DNA for DNA Nanostructure Design
    Yagyu, Hiromasa
    Lee, Jae-Young
    Kim, Do-Nyun
    Tabata, Osamu
    JOURNAL OF PHYSICAL CHEMISTRY B, 2017, 121 (19): : 5033 - 5039
  • [27] Thermal rectification of asymmetric double-stranded molecular structure
    Zhang Mao-Ping
    Zhong Wei-Rong
    Ai Bao-Quan
    ACTA PHYSICA SINICA, 2011, 60 (06)
  • [28] Molecular Dynamics Simulation of the Electrical Double Layer of Spherical Macroion
    O. V. Semashko
    E. N. Brodskaya
    O. G. Us'yarov
    Colloid Journal, 2005, 67 : 625 - 630
  • [29] Molecular dynamics simulation of the electrical double layer in ionic liquids
    Kislenko, S. A.
    Amirov, R. H.
    Samoylov, I. S.
    7TH INTERNATIONAL CONFERENCE ON APPLIED ELECTROSTATICS (ICAES-2012), 2013, 418
  • [30] Molecular dynamics simulation of the electrical double layer of spherical macroion
    Semashko, OV
    Brodskaya, EN
    Us'yarov, OG
    COLLOID JOURNAL, 2005, 67 (05) : 625 - 630