Cellular Potts modeling of complex multicellular behaviors in tissue morphogenesis

被引：67
|
作者：
Hirashima, Tsuyoshi [1 ]
Rens, Elisabeth G. [2 ,3 ]
Merks, Roeland M. H. [2 ,3 ]
机构：
[1] Kyoto Univ, Inst Frontier Life & Med Sci, Sakyo Ku, 53 Kawahara, Kyoto 6068507, Japan
[2] Ctr Wiskunde & Informat, Life Sci Grp, Sci Pk 123, NL-1098 XG Amsterdam, Netherlands
[3] Leiden Univ, Math Inst, Niels Bohrweg 1, NL-2333 CA Leiden, Netherlands
来源：
DEVELOPMENT GROWTH & DIFFERENTIATION | 2017年 / 59卷 / 05期
关键词：
blood vessel formation; cellular Potts model; cystogenesis; tube morphogenesis; DIFFERENTIAL ADHESION; KIDNEY DEVELOPMENT; BRANCHING MORPHOGENESIS; DEVELOPMENTAL BIOLOGY; CONVERGENT EXTENSION; SURFACE MECHANICS; SYSTEMS BIOLOGY; IN-VITRO; CELLS; ANGIOGENESIS;
D O I：
10.1111/dgd.12358
中图分类号：
Q2 [细胞生物学];
学科分类号：
071009 ; 090102 ;
摘要：
Mathematical modeling is an essential approach for the understanding of complex multicellular behaviors in tissue morphogenesis. Here, we review the cellular Potts model (CPM; also known as the Glazier-Graner-Hogeweg model), an effective computational modeling framework. We discuss its usability for modeling complex developmental phenomena by examining four fundamental examples of tissue morphogenesis: (i) cell sorting, (ii)cyst formation, (iii) tube morphogenesis in kidney development, and (iv) blood vessel formation. The review provides an introduction for biologists for starting simulation analysis using the CPM framework.
引用
收藏
页码：329 / 339
页数：11
相关论文
共 50 条
  • [1] Multi-Scale Modeling in Morphogenesis: A Critical Analysis of the Cellular Potts Model
    Voss-Boehme, Anja
    PLOS ONE, 2012, 7 (09):
  • [2] A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis
    Mohammad, Rhudaina Z.
    Murakawa, Hideki
    Svadlenka, Karel
    Togashi, Hideru
    COMMUNICATIONS BIOLOGY, 2022, 5 (01)
  • [3] A numerical algorithm for modeling cellular rearrangements in tissue morphogenesis
    Rhudaina Z. Mohammad
    Hideki Murakawa
    Karel Svadlenka
    Hideru Togashi
    Communications Biology, 5
  • [4] Multicellular mechanochemical hybrid cellular Potts model of tissue formation during epithelial-mesenchymal transition
    Hirway, Shreyas U.
    Lemmon, Christopher A.
    Weinberg, Seth H.
    BIOPHYSICAL JOURNAL, 2022, 121 (03) : 136 - 136
  • [5] Patterned cellular behaviors coordinating tissue morphogenesis in the developing Drosophila wing.
    Etournay, R.
    Merkel, M.
    Aigouy, B.
    Sagner, A.
    Grill, S.
    Julicher, F.
    Eaton, S.
    MOLECULAR BIOLOGY OF THE CELL, 2012, 23
  • [6] BACTERIAL MACROFIBRES - THE MORPHOGENESIS OF COMPLEX MULTICELLULAR BACTERIAL FORMS
    MENDELSON, NH
    SCIENCE PROGRESS, 1990, 74 (296) : 425 - 441
  • [7] Cellular behaviors during renal branching morphogenesis
    Costantini, F.
    FEBS JOURNAL, 2011, 278 : 24 - 24
  • [8] Multicellular rosette formation links planar cell polarity to tissue morphogenesis
    Blankenship, J. Todd
    Backovic, Stephanie T.
    Sanny, Justina S. P.
    Weitz, Ori
    Zallen, Jennifer A.
    DEVELOPMENTAL CELL, 2006, 11 (04) : 459 - 470
  • [9] A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis
    Chen, Nan
    Glazier, James A.
    Izaguirre, Jesus A.
    Alber, Mark S.
    COMPUTER PHYSICS COMMUNICATIONS, 2007, 176 (11-12) : 670 - 681
  • [10] A parallel implementation of the Cellular Potts Model for simulation of cell-based morphogenesis
    Chen, Nan
    Glazier, James A.
    Albert, Mark S.
    CELLULAR AUTOMATA, PROCEEDINGS, 2006, 4173 : 58 - 67
12345