A 2D graphical representation of protein sequence and its numerical characterization

被引：72
|
作者：
Wen, Jia [1 ]
Zhang, Yuyan [1 ]
机构：
[1] Suihua Univ, Dept Math & Comp Sci, Suihua 152061, Peoples R China
来源：
CHEMICAL PHYSICS LETTERS | 2009年 / 476卷 / 4-6期
关键词：
DNA-SEQUENCES; SIMILARITY/DISSIMILARITY; SIMILARITY; DISTANCE;
D O I：
10.1016/j.cplett.2009.06.017
中图分类号：
O64 [物理化学（理论化学）、化学物理学];
学科分类号：
070304 ; 081704 ;
摘要：
Based on a selected pair of physicochemical properties of amino acids, we propose a new 2D graphical representation of protein sequence, which may reflect the innate structure of the protein sequence. This graphical representation has no circuit or degeneracy, and the correspondence between the sequences and the graphical curves is one-to-one. Then, we introduce and compare two numerical characterizations of protein graphs as descriptors to analyze the nine DN5 protein sequences. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码：281 / 286
页数：6
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