A 2D graphical representation of protein sequence and its numerical characterization

被引：72
|
作者：
Wen, Jia [1 ]
Zhang, Yuyan [1 ]
机构：
[1] Suihua Univ, Dept Math & Comp Sci, Suihua 152061, Peoples R China
来源：
CHEMICAL PHYSICS LETTERS | 2009年 / 476卷 / 4-6期
关键词：
DNA-SEQUENCES; SIMILARITY/DISSIMILARITY; SIMILARITY; DISTANCE;
D O I：
10.1016/j.cplett.2009.06.017
中图分类号：
O64 [物理化学（理论化学）、化学物理学];
学科分类号：
070304 ; 081704 ;
摘要：
Based on a selected pair of physicochemical properties of amino acids, we propose a new 2D graphical representation of protein sequence, which may reflect the innate structure of the protein sequence. This graphical representation has no circuit or degeneracy, and the correspondence between the sequences and the graphical curves is one-to-one. Then, we introduce and compare two numerical characterizations of protein graphs as descriptors to analyze the nine DN5 protein sequences. (C) 2009 Elsevier B.V. All rights reserved.
引用
收藏
页码：281 / 286
页数：6
相关论文
共 50 条
  • [41] Some Notes on 2-D Graphical Representation of DNA Sequence
    Liu Xikui
    Li Yan
    PROCEEDINGS OF THE 27TH CHINESE CONTROL CONFERENCE, VOL 3, 2008, : 303 - 305
  • [42] On 3-D graphical representation of DNA primary sequences and their numerical characterization
    Randic, M
    Vracko, M
    Nandy, A
    Basak, SC
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2000, 40 (05): : 1235 - 1244
  • [43] New 3D graphical representation of DNA sequences and their numerical characterization
    Yuan, CX
    Liao, B
    Wang, TM
    CHEMICAL PHYSICS LETTERS, 2003, 379 (5-6) : 412 - 417
  • [44] A new 3-D graphical representation of DNA sequences and their numerical characterization
    Song, Jie
    ICCSSE 2009: PROCEEDINGS OF 2009 4TH INTERNATIONAL CONFERENCE ON COMPUTER SCIENCE & EDUCATION, 2009, : 1035 - 1039
  • [45] Application of 2D graphic representation of protein sequence based on Huffman tree method
    Qi, Zhao-Hui
    Feng, Jun
    Qi, Xiao-Qin
    Li, Ling
    COMPUTERS IN BIOLOGY AND MEDICINE, 2012, 42 (05) : 556 - 563
  • [46] Comparing RNA secondary structures based on 2D graphical representation
    Zhang, Yi
    Qiu, JiQing
    Su, LianQing
    CHEMICAL PHYSICS LETTERS, 2008, 458 (1-3) : 180 - 185
  • [47] A NEW ADJACENT PAIR 2D GRAPHICAL REPRESENTATION OF DNA SEQUENCES
    Gupta, Manoj Kumar
    Niyogi, Rajdeep
    Misra, Manoj
    JOURNAL OF BIOLOGICAL SYSTEMS, 2013, 21 (01)
  • [48] RNA secondary structure 2D graphical representation without degeneracy
    Liao, B
    Luo, JW
    Li, RF
    Zhu, W
    INTERNATIONAL JOURNAL OF QUANTUM CHEMISTRY, 2006, 106 (08) : 1749 - 1755
  • [49] A graphical representation of data quality for electron crystallography of 2D crystals
    Cheng, AC
    Yeager, M
    BIOPHYSICAL JOURNAL, 2004, 86 (01) : 81A - 81A
  • [50] 2D Graphical Representation of DNA Sequences Based on Variant Map
    Wu, Ruoxue
    Liu, Wenjia
    Mao, Yuyuan
    Zheng, Jeffrey
    IEEE ACCESS, 2020, 8 : 173755 - 173765
12345