Developing Machine-Learned Potentials for Coarse-Grained Molecular Simulations: Challenges and Pitfalls

被引:5
|
作者
Ricci, Eleonora [1 ,2 ]
Giannakopoulos, George [1 ,3 ]
Karkaletsis, Vangelis [1 ]
Theodorou, Doros N. [4 ]
Vergadou, Niki [2 ]
机构
[1] Natl Ctr Sci Res Demokritos, Inst Informat & Telecommun, Athens, Greece
[2] Natl Ctr Sci Res Demokritos, Inst Nanosci & Nanotechnol, Athens, Greece
[3] SciFY P N P C, Athens, Greece
[4] Natl Tech Univ Athens, Sch Chem Engn, Athens, Greece
关键词
Coarse-graining; Molecular Simulations; Machine Learning; Neural Network Potential; Hierarchical Modelling;
D O I
10.1145/3549737.3549793
中图分类号
TP18 [人工智能理论];
学科分类号
081104 ; 0812 ; 0835 ; 1405 ;
摘要
Coarse graining (CG) enables the investigation of molecular properties for larger systems and at longer timescales than the ones attainable at the atomistic resolution. Machine learning techniques have been recently proposed to learn CG particle interactions, i.e. develop CG force fields. Graph representations of molecules and supervised training of a graph convolutional neural network architecture are used to learn the potential of mean force through a force matching scheme. In this work, the force acting on each CG particle is correlated to a learned representation of its local environment that goes under the name of SchNet, constructed via continuous filter convolutions. We explore the application of SchNet models to obtain a CG potential for liquid benzene, investigating the effect of model architecture and hyperparameters on the thermodynamic, dynamical, and structural properties of the simulated CG systems, reporting and discussing challenges encountered and future directions envisioned.
引用
收藏
页数:6
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