Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210T (= DSM 26640T=BS107T

被引:18
|
作者
Frank, Oliver [1 ]
Pradella, Silke [1 ]
Rohde, Manfred [2 ]
Scheuner, Carmen [1 ]
Klenk, Hans-Peter [1 ]
Goeker, Markus [1 ]
Petersen, Joern [1 ]
机构
[1] Leibniz Inst DSMZ German Collect Microorganisms &, Braunschweig, Germany
[2] Helmholtz Ctr Infect Res, Braunschweig, Germany
来源
STANDARDS IN GENOMIC SCIENCES | 2014年 / 9卷 / 03期
关键词
Alphaproteobacteria; Roseobacter group; Plasmid wealth; Replication systems; Sister species; Phaeobacter inhibens; R-PACKAGE; ROSEOBACTER; GENE; PLASMID; LIKELIHOOD; MEMBER; DNA; RECLASSIFICATION; IDENTIFICATION; DAEPONENSIS;
D O I
10.4056/sigs.5179110
中图分类号
Q3 [遗传学];
学科分类号
071007 ; 090102 ;
摘要
Phaeobacter gallaeciensis CIP 105210(T) (= DSM 26640(T) = BS107(T)) is the type strain of the species Phaeobacter gallaeciensis. The genus Phaeobacter belongs to the marine Roseobacter group (Rhodobacteraceae, Alphaproteobacteria). Phaeobacter species are effective colonizers of marine surfaces, including frequent associations with eukaryotes. Strain BS107(T) was isolated from a rearing of the scallop Pecten maximus. Here we describe the features of this organism, together with the complete genome sequence, comprising eight circular replicons with a total of 4,448 genes. In addition to a high number of extrachromosomal replicons, the genome contains six genomic island and three putative prophage regions, as well as a hybrid between a plasmid and a circular phage. Phylogenomic analyses confirm previous results, which indicated that the originally reported P. gallaeciensis type-strain deposit DSM 17395 belongs to P. inhibens and that CIP 105210(T) (= DSM 26640(T)) is the sole genome-sequenced representative of P. gallaeciensis.
引用
收藏
页码:914 / 932
页数:23
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