Alternative Splicing of Transcription Factors' Genes: Beyond the Increase of Proteome Diversity

被引:11
|
作者
Talavera, David [1 ,2 ,3 ]
Orozco, Modesto [1 ,4 ,5 ,6 ]
de la Cruz, Xavier [1 ,7 ,8 ]
机构
[1] IRB, Mol Modelling & Bioinformat Unit, Barcelona Sci Pk PCB, Barcelona 08028, Spain
[2] European Bioinformat Inst EMBL, Cambridge CB10 1SD, England
[3] Univ Manchester, Fac Life Sci, Manchester M13 9PL, Lancs, England
[4] Genoma Espana, Prot Struct & Modelling Node, Barcelona Sci Pk PCB, Spanish Natl Bioinformat Inst, Barcelona 08028, Spain
[5] Univ Barcelona, Fac Biol, Dept Bioquim & Biol Mol, E-08028 Barcelona, Spain
[6] Barcelona Supercomp Ctr, Dept Life Sci, Barcelona 08034, Spain
[7] ICREA, Barcelona 08010, Spain
[8] Inst Biol Mol Barcelona, Consejo Super Invest Cient, Barcelona 08028, Spain
关键词
EXPRESSION PROFILES; FUNCTIONAL DIVERSITY; MESSENGER-RNA; ISOFORMS; MOUSE; MECHANISMS; CONSERVATION; EVOLUTION; RECEPTOR; GENOME;
D O I
10.1155/2009/905894
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Functional modification of transcription regulators may lead to developmental changes and phenotypical differences between species. In this work, we study the influence of alternative splicing on transcription factors in human and mouse. Our results show that the impact of alternative splicing on transcription factors is similar in both species, meaning that the ways to increase variability should also be similar. However, when looking at the expression patterns of transcription factors, we observe that they tend to diverge regardless of the role of alternative splicing. Finally, we hypothesise that transcription regulation of alternatively spliced transcription factors could play an important role in the phenotypical differences between species, without discarding other phenomena or functional families. Copyright (C) 2009 David Talavera et al.
引用
下载
收藏
页数:6
相关论文
共 50 条
  • [41] Alternative splicing in GPCR signalling diversity
    Marti-Solano, M.
    Babu, M. M.
    FEBS OPEN BIO, 2019, 9 : 216 - 216
  • [42] Alcoholism and Alternative Splicing of Candidate Genes
    Sasabe, Toshikazu
    Ishiura, Shoichi
    INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH, 2010, 7 (04): : 1448 - 1466
  • [43] Is alternative splicing of mammalian genes conserved?
    Nurtdinov, RN
    Mironov, AA
    Gelfand, MS
    BIOFIZIKA, 2002, 47 (04): : 587 - 594
  • [44] Frequent alternative splicing of human genes
    Mironov, AA
    Fickett, JW
    Gelfand, MS
    GENOME RESEARCH, 1999, 9 (12) : 1288 - 1293
  • [45] Vials: Visualizing Alternative Splicing of Genes
    Strobelt, Hendrik
    Alsallakh, Bilal
    Botros, Joseph
    Peterson, Brant
    Borowsky, Mark
    Pfister, Hanspeter
    Lex, Alexander
    IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS, 2016, 22 (01) : 399 - 408
  • [46] Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions
    Pil Joon Seo
    Mi-Jeong Park
    Chung-Mo Park
    Planta, 2013, 237 : 1415 - 1424
  • [47] Alternative splicing of lola generates 19 transcription factors controlling axon guidance in Drosophila
    Scott Goeke
    Elizabeth A. Greene
    Paul K. Grant
    Michael A. Gates
    Daniel Crowner
    Toshiro Aigaki
    Edward Giniger
    Nature Neuroscience, 2003, 6 : 917 - 924
  • [48] bHLH Transcription Factors Undergo Alternative Splicing During Cold Acclimation in a Eucalyptus hybrid
    Héctor Apablaza
    Myriam Solís
    Daniel Conejera
    Alexis Fonseca
    Jorge Cid
    Estefanía Tarifeño-Saldivia
    Sofía Valenzuela
    Veronica Emhart
    Marta Fernández
    Plant Molecular Biology Reporter, 2022, 40 : 310 - 326
  • [49] Alternative splicing of transcription factors in plant responses to low temperature stress: mechanisms and functions
    Seo, Pil Joon
    Park, Mi-Jeong
    Park, Chung-Mo
    PLANTA, 2013, 237 (06) : 1415 - 1424
  • [50] Alternative splicing, exon skipping, and retained introns in transcription of the human thrombospondin 2 and 3 genes
    Adolph, KW
    FASEB JOURNAL, 1999, 13 (07): : A1409 - A1409