The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

被引:2527
|
作者
Bairoch, A
Apweiler, R
机构
[1] Ctr Med Univ Geneva, Swiss Inst Bioinformat, CH-1211 Geneva 4, Switzerland
[2] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/28.1.45
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
SWISS-PROT is a curated protein sequence database which:strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases, Recent developments of the database include format and content enhancements, cross-references to additional databases, new documentation files and improvements:to TrEMBL, a computer-annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDSs) in the EMBL Nucleotide Sequence Database, except the CDSs already included in SWISS-PROT. We also describe the Human Proteomics Initiative (HPI), a major project to annotate all known human sequences according to the quality standards of SWISS-PROT, SWISS-PROT is available at: http://www.expasy.ch/sprot/ and http://www.ebi.ac.uk/swissprot/.
引用
收藏
页码:45 / 48
页数:4
相关论文
共 50 条
  • [41] HAMAP: a database of completely sequenced microbial proteome sets and manually curated microbial protein families in UniProtKB/Swiss-Prot
    Lima, Tania
    Auchincloss, Andrea H.
    Coudert, Elisabeth
    Keller, Guillaume
    Michoud, Karine
    Rivoire, Catherine
    Bulliard, Virginie
    de Castro, Edouard
    Lachaize, Corinne
    Baratin, Delphine
    Phan, Isabelle
    Bougueleret, Lydie
    Bairoch, Amos
    NUCLEIC ACIDS RESEARCH, 2009, 37 : D471 - D478
  • [42] Technical comment to "Database verification studies of SWISS-PROT and GenBank" by Karp et al.
    Apweiler, R
    Kersey, P
    Junker, V
    Bairoch, A
    BIOINFORMATICS, 2001, 17 (06) : 533 - 534
  • [43] Uniprot & Swiss-Prot: providing a link between protein sequences and state of the art knowledge
    Hinz, U
    Bairoch, A
    FEBS JOURNAL, 2005, 272 : 108 - 109
  • [44] SWISS-PROT AND THE UNIPROT PROTEIN KNOWLEDGEBASE: PROVIDING THE PLANT COMMUNITY WITH HIGH QUALITY PROTEIN DATA
    Schneider, M.
    Tognolli, M.
    Bairoch, A.
    ACTA PHYSIOLOGIAE PLANTARUM, 2004, 26 (03) : 57 - 57
  • [45] ENZYMAP: Exploiting Protein Annotation for Modeling and Predicting EC Number Changes in UniProt/Swiss-Prot
    Silveira, Sabrina de Azevedo
    de Melo-Minardi, Raquel Cardoso
    da Silveira, Carlos Henrique
    Santoro, Marcelo Matos
    Meira, Wagner, Jr.
    PLOS ONE, 2014, 9 (02):
  • [46] Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database
    Khoury, George A.
    Baliban, Richard C.
    Floudas, Christodoulos A.
    SCIENTIFIC REPORTS, 2011, 1
  • [47] Proteome-wide post-translational modification statistics: frequency analysis and curation of the swiss-prot database
    George A. Khoury
    Richard C. Baliban
    Christodoulos A. Floudas
    Scientific Reports, 1
  • [48] An anomalous abundance of tryptophan residues in ceramide synthases based on analysis of all membrane proteins in the Swiss-Prot database
    Mestre, Beatriz
    Zelnik, Iris D.
    Izrailov, Stav
    Dingjan, Tamir
    Lvovsky, Gideon
    Fidel, Lena
    Ben-Dor, Shifra
    Futerman, Anthony H.
    JOURNAL OF BIOLOGICAL CHEMISTRY, 2025, 301 (01)
  • [49] Use of artificial neural networks in sequential models of membrane proteins of the Swiss-Prot database for the detection of transmembrane segments
    Kalpakas, A. C.
    Christodoulou, M. A.
    2007 MEDITERRANEAN CONFERENCE ON CONTROL & AUTOMATION, VOLS 1-4, 2007, : 167 - 172
  • [50] The Swiss-Prot protein knowledgebase and ExPASy: providing the plant community with high quality proteomic data and tools
    Schneider, M
    Tognolli, M
    Bairoch, A
    PLANT PHYSIOLOGY AND BIOCHEMISTRY, 2004, 42 (12) : 1013 - 1021