The SWISS-PROT protein sequence database and its supplement TrEMBL in 2000

被引:2527
|
作者
Bairoch, A
Apweiler, R
机构
[1] Ctr Med Univ Geneva, Swiss Inst Bioinformat, CH-1211 Geneva 4, Switzerland
[2] European Bioinformat Inst, EMBL Outstn, Cambridge CB10 1SD, England
关键词
D O I
10.1093/nar/28.1.45
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
SWISS-PROT is a curated protein sequence database which:strives to provide a high level of annotation (such as the description of the function of a protein, its domains structure, post-translational modifications, variants, etc.), a minimal level of redundancy and high level of integration with other databases, Recent developments of the database include format and content enhancements, cross-references to additional databases, new documentation files and improvements:to TrEMBL, a computer-annotated supplement to SWISS-PROT. TrEMBL consists of entries in SWISS-PROT-like format derived from the translation of all coding sequences (CDSs) in the EMBL Nucleotide Sequence Database, except the CDSs already included in SWISS-PROT. We also describe the Human Proteomics Initiative (HPI), a major project to annotate all known human sequences according to the quality standards of SWISS-PROT, SWISS-PROT is available at: http://www.expasy.ch/sprot/ and http://www.ebi.ac.uk/swissprot/.
引用
收藏
页码:45 / 48
页数:4
相关论文
共 50 条
  • [31] Thermostable Bacterial Endoglucanases Mined from Swiss-Prot Database
    Qiu, Li-Huan
    Li, Chun-Xiu
    Sun, Jie
    Wang, Zhilong
    Ye, Qin
    Xu, Jian-He
    APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY, 2011, 165 (7-8) : 1473 - 1484
  • [32] THE SWISS-PROT PROTEIN-SEQUENCE DATA-BANK, RECENT DEVELOPMENTS
    BAIROCH, A
    BOECKMANN, B
    NUCLEIC ACIDS RESEARCH, 1993, 21 (13) : 3093 - 3096
  • [33] Thermostable Bacterial Endoglucanases Mined from Swiss-Prot Database
    Li-Huan Qiu
    Chun-Xiu Li
    Jie Sun
    Zhilong Wang
    Qin Ye
    Jian-He Xu
    Applied Biochemistry and Biotechnology, 2011, 165 : 1473 - 1484
  • [34] Tox-Prot, the toxin protein annotation program of the Swiss-Prot protein knowledgebase
    Jungo, F
    Bairoch, A
    TOXICON, 2005, 45 (03) : 293 - 301
  • [35] Protein variety and functional diversity: Swiss-Prot annotation in its biological context
    Boeckmann, B
    Blatter, MC
    Famiglietti, L
    Hinz, U
    Lane, L
    Roechert, B
    Bairoch, A
    COMPTES RENDUS BIOLOGIES, 2005, 328 (10-11) : 882 - 899
  • [36] Model organisms Saccharomyces cerevisiae and Schizosaccharomyces pombe in the Swiss-Prot database.
    Laiho, KKM
    Apweiler, R
    YEAST, 2003, 20 : S338 - S338
  • [37] The UniProtKB/Swiss-Prot knowledgebase and its Plant Proteome Annotation Program
    Schneider, Michel
    Lane, Lydie
    Boutet, Emmanuel
    Lieberherr, Damien
    Tognolli, Michael
    Bougueleret, Lydie
    Baiyoch, Amos
    JOURNAL OF PROTEOMICS, 2009, 72 (03) : 567 - 573
  • [38] PRECIS: Protein reports engineered from concise information in SWISS-PROT
    Mitchell, AL
    Reich, JR
    Attwood, TK
    BIOINFORMATICS, 2003, 19 (13) : 1664 - 1671
  • [39] The UniProtKB/Swiss-Prot Tox-Prot program: A central hub of integrated venom protein data
    Jungo, Florence
    Bougueleret, Lydie
    Xenarios, Ioannis
    Poux, Sylvain
    TOXICON, 2012, 60 (04) : 551 - 557
  • [40] UniProtKB/Swiss-Prot; How a protein knowledgebase can serve the medical community
    Estreicher, A.
    Bairoch, A.
    MOLECULAR & CELLULAR PROTEOMICS, 2006, 5 (10) : S65 - S65