Critical slowing down in biochemical networks with feedback

被引:8
|
作者
Byrd, Tommy A. [1 ]
Erez, Amir [2 ]
Vogel, Robert M. [3 ]
Peterson, Curtis [1 ,4 ,5 ]
Vennettilli, Michael [1 ]
Altan-Bonnet, Gregoire [6 ]
Mugler, Andrew [1 ]
机构
[1] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
[2] Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USA
[3] IBM TJ Watson Res Ctr, Yorktown Hts, NY 10598 USA
[4] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[5] Arizona State Univ, Sch Math & Stat Sci, Tempe, AZ 85287 USA
[6] NCI, Immunodynam Grp, Canc & Inflammat Program, NIH, Bethesda, MD 20814 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
EARLY-WARNING SIGNALS; TIPPING POINT; TRANSITIONS; DYNAMICS; MODELS;
D O I
10.1103/PhysRevE.100.022415
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
引用
收藏
页数:9
相关论文
共 50 条
  • [42] CRITICAL SLOWING DOWN OF XY-MODEL ALONG CRITICAL FIELD
    YAHATA, H
    PHYSICS LETTERS A, 1971, A 35 (05) : 366 - +
  • [43] Linear theory of the spatial signatures of critical slowing down
    Tirabassi, Giulio
    PHYSICAL REVIEW RESEARCH, 2024, 6 (02):
  • [44] Reduced critical slowing down for statistical physics simulations
    Langfeld, Kurt
    Buividovich, Pavel
    Rakow, P. E. L.
    Roscoe, James
    PHYSICAL REVIEW E, 2022, 106 (05)
  • [45] Enhancement of critical slowing down in chiral phase transition
    Koide, T
    NUCLEAR PHYSICS A, 2005, 749 : 178C - 181C
  • [46] CRITICAL SLOWING DOWN IN PERIODICALLY PERTURBED CHEMICAL OSCILLATIONS
    DEWEL, G
    BORCKMANS, P
    JOURNAL OF PHYSICAL CHEMISTRY, 1988, 92 (23): : 6482 - 6485
  • [47] DYNAMIC CRITICAL SLOWING DOWN IN CSNIF3
    CAILLE, A
    POIRIER, M
    SOLID STATE COMMUNICATIONS, 1986, 60 (12) : 945 - 949
  • [48] CRITICAL SLOWING-DOWN IN MICROWAVE ABSORPTIVE BISTABILITY
    BARBARINO, S
    GOZZINI, A
    MACCARRONE, F
    LONGO, I
    STAMPACCHIA, R
    NUOVO CIMENTO DELLA SOCIETA ITALIANA DI FISICA B-GENERAL PHYSICS RELATIVITY ASTRONOMY AND MATHEMATICAL PHYSICS AND METHODS, 1982, 71 (02): : 183 - 195
  • [49] DEFEATING CRITICAL SLOWING DOWN FOR ABELIAN GAUGE DYNAMICS
    ADLER, SL
    BHANOT, G
    LIPPERT, T
    SCHILLING, K
    UEBERHOLZ, P
    NUCLEAR PHYSICS B, 1992, 368 (03) : 745 - 754
  • [50] Critical slowing-down: indicator of extreme events?
    Metayer, Cyrille
    Boyer, Jean Marc
    Gomel, Alexis
    Tredicce, Jorge
    2017 CONFERENCE ON LASERS AND ELECTRO-OPTICS EUROPE & EUROPEAN QUANTUM ELECTRONICS CONFERENCE (CLEO/EUROPE-EQEC), 2017,