Critical slowing down in biochemical networks with feedback

被引:8
|
作者
Byrd, Tommy A. [1 ]
Erez, Amir [2 ]
Vogel, Robert M. [3 ]
Peterson, Curtis [1 ,4 ,5 ]
Vennettilli, Michael [1 ]
Altan-Bonnet, Gregoire [6 ]
Mugler, Andrew [1 ]
机构
[1] Purdue Univ, Dept Phys & Astron, W Lafayette, IN 47907 USA
[2] Princeton Univ, Dept Mol Biol, Princeton, NJ 08544 USA
[3] IBM TJ Watson Res Ctr, Yorktown Hts, NY 10598 USA
[4] Arizona State Univ, Dept Phys, Tempe, AZ 85287 USA
[5] Arizona State Univ, Sch Math & Stat Sci, Tempe, AZ 85287 USA
[6] NCI, Immunodynam Grp, Canc & Inflammat Program, NIH, Bethesda, MD 20814 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
EARLY-WARNING SIGNALS; TIPPING POINT; TRANSITIONS; DYNAMICS; MODELS;
D O I
10.1103/PhysRevE.100.022415
中图分类号
O35 [流体力学]; O53 [等离子体物理学];
学科分类号
070204 ; 080103 ; 080704 ;
摘要
Near a bifurcation point, the response time of a system is expected to diverge due to the phenomenon of critical slowing down. We investigate critical slowing down in well-mixed stochastic models of biochemical feedback by exploiting a mapping to the mean-field Ising universality class. We analyze the responses to a sudden quench and to continuous driving in the model parameters. In the latter case, we demonstrate that our class of models exhibits the Kibble-Zurek collapse, which predicts the scaling of hysteresis in cellular responses to gradual perturbations. We discuss the implications of our results in terms of the tradeoff between a precise and a fast response. Finally, we use our mapping to quantify critical slowing down in T cells, where the addition of a drug is equivalent to a sudden quench in parameter space.
引用
收藏
页数:9
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