Freezing atom method in molecular dynamics simulation

被引:0
|
作者
Guo, WL [1 ]
Chang, TZ
机构
[1] Nanjing Univ Aeronaut & Astronaut, Dept Aircraft Engn, Nanjing 210016, Peoples R China
[2] Xian Jiaotong Univ, State Key Lab Mech Strength & Vibrat, Xian 710049, Peoples R China
关键词
molecular dynamics; freezing atom method;
D O I
暂无
中图分类号
T [工业技术];
学科分类号
08 ;
摘要
Molecular dynamics method is the most powerful numerical technology in molecular simulation in the scale of nanometer, but it is time-consumed and hard to be used to multiscale simulation not only because the large number of atoms in a complex molecular system but also the femtosecond order of time step requirement. To enable a larger time step and less time-consuming in molecular simulation, a freezing atom method (FAM) is developed by using of the principle of movement discomposing and composing of particles. It is shown that in case of weak coupling between high- and low-frequency process, the use of FAM enable a time step 10(5) longer than the classic molecular dynamics method and higher accuracy of convergence.
引用
收藏
页码:717 / 720
页数:4
相关论文
共 50 条
  • [41] Hydrogen atom recombination on tungsten at high temperature: Experiment and Molecular Dynamics Simulation
    Rutigliano, M.
    Santoro, D.
    Balat-Pichelin, M.
    SURFACE SCIENCE, 2014, 628 : 66 - 75
  • [42] The Do's and Do Not's of a 100 Million Atom Molecular Dynamics Simulation
    Singharoy, Abhishek
    Chandler, Danielle
    Durrant, Jacob
    Sener, Melih
    Amaro, Rommie
    Schulten, Klaus
    BIOPHYSICAL JOURNAL, 2015, 108 (02) : 158A - 158A
  • [43] All-Atom Molecular Dynamics Simulation of Multidrug Efflux Transporter AcrB
    Yamane, Tsutomu
    Ikeguchi, Mitsunori
    BIOPHYSICAL JOURNAL, 2011, 100 (03) : 544 - 544
  • [44] Development of modified embedded-atom model and molecular dynamics simulation of cesium
    Lv, Weimiao
    Yan, Liuming
    Wang, Zhaomin
    Zhang, Dongqing
    Li, Xuejiao
    Wang, Hui
    Hu, Yidong
    Yue, Baohua
    COMPUTATIONAL MATERIALS SCIENCE, 2021, 194
  • [45] ColDock: Concentrated Ligand Docking with All-Atom Molecular Dynamics Simulation
    Takemura, Kazuhiro
    Sato, Chika
    Kitao, Akio
    JOURNAL OF PHYSICAL CHEMISTRY B, 2018, 122 (29): : 7191 - 7200
  • [46] Molecular dynamics comes of age: 320 billion atom simulation on BlueGene/L
    Kadau, Kai
    Germann, Timothy C.
    Lomdahl, Peter S.
    INTERNATIONAL JOURNAL OF MODERN PHYSICS C, 2006, 17 (12): : 1755 - 1761
  • [47] All-Atom Molecular Dynamics Simulation of a Photosystem I/Detergent Complex
    Harris, Bradley J.
    Cheng, Xiaolin
    Frymier, Paul
    JOURNAL OF PHYSICAL CHEMISTRY B, 2014, 118 (40): : 11633 - 11645
  • [48] Homogeneous nucleation and microstructure evolution in million-atom molecular dynamics simulation
    Yasushi Shibuta
    Kanae Oguchi
    Tomohiro Takaki
    Munekazu Ohno
    Scientific Reports, 5
  • [49] Molecular dynamics simulation of hydrogen atom diffusion in crystal lattice of fcc metals
    Poletaev, Gennady M.
    Zorya, Irina V.
    Novoselova, Darya V.
    Starostenkov, Mikhail D.
    INTERNATIONAL JOURNAL OF MATERIALS RESEARCH, 2017, 108 (10) : 785 - 790
  • [50] Properties of iron under Earth's core conditions: Molecular dynamics simulation with an embedded-atom method potential
    Belashchenko, D. K.
    Kravchunovskaya, N. E.
    Ostrovski, O. I.
    INORGANIC MATERIALS, 2008, 44 (03) : 248 - 257