Benchmark estimation for Markov chain Monte Carlo samples

While studying various features of the posterior distribution of a vector-valued parameter using an MCMC sample, a subsample is often all that is available for analysis. The goal of benchmark estimation is to use the best available information, that is, the full MCMC sample, to improve future estimates made on the basis of the subsample. We discuss a simple approach to do this and provide a theoretical basis for the method. The methodology and benefits of benchmark estimation are illustrated using a well-known example from the literature. We obtain nearly a 90% reduction in MSE with the technique based on a 1-in-10 subsample and show that greater benefits accrue with the thinner subsamples that are often used in practice.