Supplementary data for genome-wide DNA methylation and gene expression analysis of PBMCs in patients with metabolic syndrome
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作者:
Baek, Su-Jin
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Korea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South KoreaKorea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South Korea
Baek, Su-Jin
[1
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Lee, Siwoo
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Korea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South KoreaKorea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South Korea
Lee, Siwoo
[1
]
Jin, Hee-Jeong
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Korea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South KoreaKorea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South Korea
Jin, Hee-Jeong
[1
]
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[1] Korea Inst Oriental Med, KM Data Div, 1672 Yuseong Daero, Daejeon 34054, South Korea
This supplementary data supports the research article 'Genome-wide DNA methylation profiling reveals candidate biomarkers and probable molecular mechanism of metabolic syndrome' (Baek et al., in press). To obtain these data, 32 participants with metabolic syndrome (MetS) were enrolled in the associated study. We collected peripheral blood mononuclear cells (PBMCs) from 11 patients with MetS and nine controls and compared genome-wide gene expression and DNA methylation signatures. The remaining 12 participants were used for the experimental validation of the candidate groups. We provide the raw, analyzed, and filtered genomewide DNA methylation data, obtained using the Infinium Human MethylationEPIC BeadChIP array, and whole transcriptome sequencing data (accession number GSE181647). We list the differentially expressed and differentially methylated genes and their biological functions. These data can serve as a basis for screening appropriate epigenetic biomarkers for MetS. (C) 2022TheAuthor(s). PublishedbyElsevierInc.
机构:
Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Univ Chinese Acad Sci, Beijing 100049, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Song, Qing-Xin
Lu, Xiang
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Univ Chinese Acad Sci, Beijing 100049, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Lu, Xiang
Li, Qing-Tian
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Univ Chinese Acad Sci, Beijing 100049, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Li, Qing-Tian
Chen, Hui
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Univ Chinese Acad Sci, Beijing 100049, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Chen, Hui
Hu, Xing-Yu
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Hu, Xing-Yu
Ma, Biao
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Ma, Biao
Zhang, Wan-Ke
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Zhang, Wan-Ke
Chen, Shou-Yi
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
Chen, Shou-Yi
Zhang, Jin-Song
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Chinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R ChinaChinese Acad Sci, Inst Genet & Dev Biol, State Key Lab Plant Genom, Beijing 100101, Peoples R China
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Univ Ljubljana, Fac Med, Inst Forens Med, Korytkova Ulica 2, SI-1000 Ljubljana, SloveniaUniv Ljubljana, Fac Med, Inst Biochem, Vrazov Trg 2, SI-1000 Ljubljana, Slovenia
Zupanc, Tomaz
Paska, Alja Videtic
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Univ Ljubljana, Fac Med, Inst Biochem, Vrazov Trg 2, SI-1000 Ljubljana, SloveniaUniv Ljubljana, Fac Med, Inst Biochem, Vrazov Trg 2, SI-1000 Ljubljana, Slovenia
机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Guanglei Li
Qitao Jia
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Qitao Jia
Jianguo Zhao
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Jianguo Zhao
Xinyun Li
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Xinyun Li
Mei Yu
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Mei Yu
Melissa S Samuel
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Melissa S Samuel
Shuhong Zhao
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Shuhong Zhao
Randall S Prather
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
Randall S Prather
Changchun Li
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机构:Huazhong Agricultural University,Key Lab of Agriculture Animal Genetics, Breeding, and Reproduction of Ministry of Education, College of Animal Science and Technology
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Qingdao Univ Technol, Sch Informat & Control Engn, Qingdao, Shandong, Peoples R ChinaQingdao Univ Technol, Sch Informat & Control Engn, Qingdao, Shandong, Peoples R China
Kou, Chuanhua
Wang, Shudong
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China Univ Petr East China, Coll Comp & Commun Engn, Qingdao, Shandong, Peoples R ChinaQingdao Univ Technol, Sch Informat & Control Engn, Qingdao, Shandong, Peoples R China
Wang, Shudong
Zhang, Yulin
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Shandong Univ Sci & Technol, Coll Math & Syst Sci, Qingdao, Shandong, Peoples R ChinaQingdao Univ Technol, Sch Informat & Control Engn, Qingdao, Shandong, Peoples R China