StarDOM: From STAR format to XML

被引:1
|
作者
Linge, JP [1 ]
Nilges, M [1 ]
Ehrlich, L [1 ]
机构
[1] European Mol Biol Lab, D-69012 Heidelberg, Germany
关键词
BioMagResBank; document object model; mmCIF; STAR; XML;
D O I
10.1023/A:1008347330165
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
StarDOM is a software package for the representation of STAR files as document object models and the conversion of STAR files into XML. This allows interactive navigation by using the Document Object Model representation of the data as well as easy access by XML query languages. As an example application, the entire BioMagResBank has been transformed into XML format. Using an XML query language, statistical queries on the collected NMR data sets can be constructed with very little effort. The BioMagResBank/XML data and the software can be obtained at http://www.nmr.embl-heidelberg.de/nmr/StarDOM/.
引用
收藏
页码:169 / 172
页数:4
相关论文
共 50 条
  • [21] An XML Based Middleware for ECG Format Conversion
    Li, Xuchen
    Vojisavljevic, Vuk
    Fang, Qiang
    2009 ANNUAL INTERNATIONAL CONFERENCE OF THE IEEE ENGINEERING IN MEDICINE AND BIOLOGY SOCIETY, VOLS 1-20, 2009, : 1691 - 1694
  • [22] A XML Format Secure Protocol-OpenSST
    Zhang, Xinhua
    Jiang, Chunyan
    Huang, Wangjun
    Meinel, Christoph
    3RD ACS/IEEE INTERNATIONAL CONFERENCE ON COMPUTER SYSTEMS AND APPLICATIONS, 2005, 2005,
  • [23] Specifics on a XML data format for scientific data
    Shaya, E
    Thomas, B
    Cheung, C
    ASTRONOMICAL DATA ANALYSIS SOFTWARE AND SYSTEMS X, 2001, 238 : 217 - 220
  • [24] MetaLex XML and the Legal Knowledge Interchange Format
    Boer, Alexander
    Winkels, Radboud
    Vitali, Fabio
    COMPUTABLE MODELS OF THE LAW: LANGUAGES, DIALOGUES, GAMES, ONTOLOGIES, 2008, 4884 : 21 - +
  • [25] An XML format for benchmarks in High School Timetabling
    Gerhard Post
    Samad Ahmadi
    Sophia Daskalaki
    Jeffrey H. Kingston
    Jari Kyngas
    Cimmo Nurmi
    David Ranson
    Annals of Operations Research, 2012, 194 : 385 - 397
  • [26] 'Bombed into Stardom!' - Roddy McDowall, 'British Evacuee Star' in Hollywood
    Lawrence, Michael
    JOURNAL OF BRITISH CINEMA AND TELEVISION, 2015, 12 (01) : 45 - 62
  • [27] Fuzzy XML model for representing fuzzy relational databases in fuzzy XML format
    Jiwani, Alnaar
    Alimohamed, Yasin
    Spence, Krista
    Ozyer, Tansel
    Alhajj, Reda
    ICEIS 2006: PROCEEDINGS OF THE EIGHTH INTERNATIONAL CONFERENCE ON ENTERPRISE INFORMATIONAL SYSTEMS: DATABASES AND INFORMATION SYSTEMS INTEGRATION, 2006, : 163 - +
  • [28] XML-BSPM: an XML format for storing Body Surface Potential Map recordings
    Raymond R Bond
    Dewar D Finlay
    Chris D Nugent
    George Moore
    BMC Medical Informatics and Decision Making, 10
  • [29] XML-BSPM: an XML format for storing Body Surface Potential Map recordings
    Bond, Raymond R.
    Finlay, Dewar D.
    Nugent, Chris D.
    Moore, George
    BMC MEDICAL INFORMATICS AND DECISION MAKING, 2010, 10
  • [30] FORMAT TELEVISION NEWS OF THE PROGRAM "STAR"
    Lebedev, Aleksey A.
    THEORETICAL AND PRACTICAL ISSUES OF JOURNALISM, 2015, 4 (01): : 60 - 69