Single-nucleotide polymorphism in a local population of Trichophyton rubrum

被引：1
|
作者：
Pchelin, Ivan M. [1 ]
Azarov, Daniil V. [2 ]
Chilina, Galina A. [1 ]
Dmitriev, Kirill A. [1 ]
Vasilyeva, Natalya V. [1 ]
Taraskina, Anastasia E. [1 ]
机构：
[1] North Western State Med Univ, Kashkin Res Inst Med Mycol, St Petersburg, Russia
[2] North Western State Med Univ, Dept Epidemiol Parasitol & Disinfectol, St Petersburg, Russia
来源：
MEDICAL MYCOLOGY | 2018年 / 56卷 / 01期
基金：
俄罗斯基础研究基金会;
关键词：
epidemiology; NTS typing; SNP; dermatophyte; tinea pedis; NONTRANSCRIBED SPACER; DNA; DIFFERENTIATION; MICROSATELLITES; ONYCHOMYCOSIS;
D O I：
10.1093/mmy/myx009
中图分类号：
R51 [传染病];
学科分类号：
100401 ;
摘要：
Trichophyton rubrum is an important causative agent of superficial mycoses worldwide. To uncover a genetic composition of a local population of this fungus, we sequenced A7C99 6411 and A7C99 6714 loci, coding for hypothetical proteins and revealed two complex genotypes, differing by a single missense mutation in each locus. One of the two A7C99 6411/6714 genotypes was not found in tinea pedis cases and demonstrated mostly longer TRS-1 elements when compared to another genotype. Thus, we present a description of nucleotide polymorphism in protein-coding loci in T. rubrum and provide evidence for ecological preferences of T. rubrum genotypes at a local scale.
引用
收藏
页码：125 / 128
页数：4
相关论文
共 50 条
  • [21] Single-Nucleotide Polymorphism Bioinformatics A Comprehensive Review of Resources
    Johnson, Andrew D.
    CIRCULATION-CARDIOVASCULAR GENETICS, 2009, 2 (05) : 530 - U289
  • [22] A microfluidic device for multiplex single-nucleotide polymorphism genotyping
    Zhu, Jing
    Qiu, Chunmei
    Palla, Mirko
    ThaiHuu Nguyen
    Russo, James J.
    Ju, Jingyue
    Lin, Qiao
    RSC ADVANCES, 2014, 4 (09) : 4269 - 4277
  • [23] Amylin single-nucleotide polymorphism and Parkinson's disease
    Valenti-Azcarate, R.
    Martinez-Valbuena, I.
    Marcilla Garcia, I.
    Marti, G.
    Carmona-Abellan, M.
    Tunon-Alvarez, M. T.
    Luquin-Piudo, M. T.
    MOVEMENT DISORDERS, 2019, 34
  • [24] Electroanalysis of single-nucleotide polymorphism by hairpin DNA architectures
    Alireza Abi
    Elena E. Ferapontova
    Analytical and Bioanalytical Chemistry, 2013, 405 : 3693 - 3703
  • [25] Single-nucleotide polymorphism discovery by targeted DNA photocleavage
    Hart, JR
    Johnson, MD
    Barton, JK
    PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, 2004, 101 (39) : 14040 - 14044
  • [26] Single-nucleotide polymorphism in chronic rhinosinusitis: A systematic review
    Antonino, Maniaci
    Nicolo, Musso
    Renee, Lechien Jerome
    Federico, Merlino
    Chiara, Viglianisi
    Stefano, Stracquadanio
    Maria, Santagati
    Salvatore, Cocuzza
    Antonio, Bonanno
    Calvo-Henriquez, Christian
    Stefania, Stefani
    La Mantia, Ignazio
    CLINICAL OTOLARYNGOLOGY, 2022, 47 (01) : 14 - 23
  • [27] The use of planar electrophoresis for detection of single-nucleotide polymorphism
    Boór, K
    Rónai, Z
    Sasvárl-Székely, M
    Gaszner, P
    Kalász, H
    JPC-JOURNAL OF PLANAR CHROMATOGRAPHY-MODERN TLC, 2002, 15 (02) : 101 - 106
  • [28] A simple and ultrasensitive fluorescence assay for single-nucleotide polymorphism
    Ma, Qian
    Gao, Zhiqiang
    ANALYTICAL AND BIOANALYTICAL CHEMISTRY, 2018, 410 (13) : 3093 - 3100
  • [29] Effects of single-nucleotide polymorphism on the pharmacokinetics and pharmacodynamics of metformin
    Li, Shaoqian
    Xu, Bo
    Fan, Shangzhi
    Kang, Bo
    Deng, Lijing
    Chen, Danjun
    Yang, Bo
    Tang, Fan
    He, Zunbo
    Xue, Yong
    Zhou, Jie-Can
    EXPERT REVIEW OF CLINICAL PHARMACOLOGY, 2022, 15 (09) : 1107 - 1117
  • [30] The Use of Planar Electrophoresis for Detection of Single-Nucleotide Polymorphism
    Krisztina Boór
    Zsolt Rónai
    Mária Sasvári-Székely
    Péter Gaszner
    Huba Kalász
    JPC – Journal of Planar Chromatography – Modern TLC, 2002, 15 : 101 - 106
12345