Application of 2-D graphical representation of DNA sequence

被引：49
|
作者：
Liao, B [1 ]
Tan, MS
Ding, KQ
机构：
[1] Hunan Univ, Sch Comp & Commun, Dept Comp Sci, Changsha 410082, Hunan, Peoples R China
[2] Chinese Acad Sci, Grad Sch, Beijing 100049, Peoples R China
[3] Chongqing Univ, Chongqing 404000, Wanzhou, Peoples R China
来源：
CHEMICAL PHYSICS LETTERS | 2005年 / 414卷 / 4-6期
关键词：
D O I：
10.1016/j.cplett.2005.08.079
中图分类号：
O64 [物理化学（理论化学）、化学物理学];
学科分类号：
070304 ; 081704 ;
摘要：
Recently, we proposed a 2-D graphical representation of DNA sequence [Bo Liao, A 2-D graphical representation of DNA sequence, Chem. Phys. Lett. 401 (2005) 196-199]. Based on this representation, we consider properties of mutations and compute the similarities among 11 mitochondrial sequences belonging to different species. The elements of the similarity matrix are used to construct phylogenic tree. Unlike most existing phylogeny construction methods, the proposed method does not require multiple alignment. (c) 2005 Elsevier B.V. All rights reserved.
引用
收藏
页码：296 / 300
页数：5
相关论文
共 50 条
  • [1] Some notes on 2-D graphical representation of DNA sequence
    Liu, YC
    Guo, XF
    Xu, J
    Pan, LQ
    Wang, SY
    JOURNAL OF CHEMICAL INFORMATION AND COMPUTER SCIENCES, 2002, 42 (03): : 529 - 533
  • [2] Some Notes on 2-D Graphical Representation of DNA Sequence
    Liu Xikui
    Li Yan
    PROCEEDINGS OF THE 27TH CHINESE CONTROL CONFERENCE, VOL 3, 2008, : 303 - 305
  • [3] Compact 2-D graphical representation of DNA
    Randic, M
    Vracko, M
    Zupan, J
    Novic, M
    CHEMICAL PHYSICS LETTERS, 2003, 373 (5-6) : 558 - 562
  • [4] A class of new 2-D graphical representation of DNA sequences and their application
    Yao, YH
    Wang, TM
    CHEMICAL PHYSICS LETTERS, 2004, 398 (4-6) : 318 - 323
  • [5] 2-D graphical representation for characteristic sequences of DNA and its application
    Li, Chun
    Hu, Ji
    JOURNAL OF BIOCHEMISTRY AND MOLECULAR BIOLOGY, 2006, 39 (03): : 292 - 296
  • [6] A 2D graphical representation of DNA sequence
    Liao, B
    CHEMICAL PHYSICS LETTERS, 2005, 401 (1-3) : 196 - 199
  • [7] On 2D graphical representation of DNA sequence of nondegeneracy
    Zhang, YS
    Liao, B
    Ding, KQ
    CHEMICAL PHYSICS LETTERS, 2005, 411 (1-3) : 28 - 32
  • [8] Novel 2-D graphical representation of DNA sequences and their numerical characterization
    Randic, M
    Vracko, M
    Lers, N
    Plavsic, D
    CHEMICAL PHYSICS LETTERS, 2003, 368 (1-2) : 1 - 6
  • [9] A novel 2-D graphical representation of DNA sequences of low degeneracy
    Guo, XF
    Randic, M
    Basak, SC
    CHEMICAL PHYSICS LETTERS, 2001, 350 (1-2) : 106 - 112
  • [10] A new 2-D graphical representation of DNA sequences and their numerical characterization
    Song, J
    Tang, HW
    JOURNAL OF BIOCHEMICAL AND BIOPHYSICAL METHODS, 2005, 63 (03): : 228 - 239
12345