Scanning for nucleotide variations in mitochondrial DNA fragments of Schistosoma japonicum by single-strand conformation polymorphism

被引:37
|
作者
Bogh, HO
Zhu, XQ
Qian, BZ
Gasser, RB
机构
[1] Univ Melbourne, Dept Vet Sci, Werribee, Vic 3030, Australia
[2] Danish Ctr Expt Parasitol, DK-1870 Frederiksberg C, Denmark
[3] Zhejiang Acad Med Sci, Inst Parasit Dis, WHO, Collaborating Ctr Helminthiasis, Hangzhou, Peoples R China
关键词
Schistosoma japonicum; mitochondrial DNA; NADH dehydrogenase 1; cytochrome c oxidase subunit I; mutations;
D O I
10.1017/S0031182098003527
中图分类号
R38 [医学寄生虫学]; Q [生物科学];
学科分类号
07 ; 0710 ; 09 ; 100103 ;
摘要
In this study, we employed a mutation scanning approach for the direct visual display of genetic variability in mitochondrial DNA (mtDNA) fragments within and among populations of Schistosoma japonicum from the People's Republic of China. Fragments of the NADH dehydrogenase 1 gene (ND1) and the cytochrome c oxidase subunit I (COI) were individually amplified front parasite DNA by polymerase chain reaction (PCR), denatured and subjected to single-strand conformation polymorphism (SSCP) analysis. Using ND1 and COI fragments, individuals representing different genotypes could be readily identified based on characteristic and reproducible SSCP profiles. The results demonstrated the usefulness of SSCP for the direct visual display of low-level sequence variation in mtDNA of S. japonicum prior to DNA sequence analysis. This approach has important implications for studying the genetic structure and biology of S. japonicum populations, and for analysing the inheritance of mitochondrial DNA.
引用
收藏
页码:73 / 82
页数:10
相关论文
共 50 条
  • [31] RAPID IDENTIFICATION OF BACTERIA BY PCR SINGLE-STRAND CONFORMATION POLYMORPHISM
    WIDJOJOATMODJO, MN
    FLUIT, AC
    VERHOEF, J
    JOURNAL OF CLINICAL MICROBIOLOGY, 1994, 32 (12) : 3002 - 3007
  • [32] Identification of mycobacteria by nonradioisotopic single-strand conformation polymorphism analysis
    Tokue, Y
    Sugano, K
    Noda, T
    Saito, D
    Shimosato, Y
    Ohkura, H
    Kakizoe, T
    Sekiya, T
    DIAGNOSTIC MICROBIOLOGY AND INFECTIOUS DISEASE, 1995, 23 (04) : 129 - 133
  • [33] Single-strand conformation polymorphism (SSCP) for the analysis of genetic variation
    Gasser, Robin B.
    Hu, Min
    Chilton, Neil B.
    Campbell, Bronwyn E.
    Jex, Aaron J.
    Otranto, Domenico
    Cafarchia, Claudia
    Beveridge, Ian
    Zhu, Xingquan
    NATURE PROTOCOLS, 2006, 1 (06) : 3121 - 3128
  • [34] DETECTION OF MUTANT SEQUENCES BY SINGLE-STRAND CONFORMATION POLYMORPHISM ANALYSIS
    SEKIYA, T
    MUTATION RESEARCH, 1993, 288 (01): : 79 - 83
  • [35] SINGLE-STRAND CONFORMATION POLYMORPHISM ANALYSIS OF THE HCV HYPERVARIABLE REGION
    LAREU, RR
    REED, WD
    SWANSON, NR
    HEPATOLOGY, 1995, 22 (04) : 903 - 903
  • [36] Sensitivity and applications of the PCR Single-Strand Conformation Polymorphism method
    Kakavas, Konstantinos, V
    MOLECULAR BIOLOGY REPORTS, 2021, 48 (04) : 3629 - 3635
  • [37] Development of a Sensitive Deaminated Single-Strand Conformation Polymorphism (DSSCP)
    Sadeq Vallian
    Isar Nassiri
    Applied Biochemistry and Biotechnology, 2010, 160 : 927 - 931
  • [38] Single-strand conformation polymorphism (SSCP)-based mutation scanning approaches to fingerprint sequence variation in ribosomal DNA of ascaridoid nematodes
    Zhu, XQ
    Gasser, RB
    ELECTROPHORESIS, 1998, 19 (8-9) : 1366 - 1373
  • [39] AN IMPROVED METHOD FOR RAPID SCREENING OF DNA MUTATIONS BY NONRADIOACTIVE SINGLE-STRAND CONFORMATION POLYMORPHISM PROCEDURE
    CHAUBERT, P
    BAUTISTA, D
    BENHATTAR, J
    BIOTECHNIQUES, 1993, 15 (04) : 586 - 586
  • [40] SCREENING FOR MUTATIONS BY RNA SINGLE-STRAND CONFORMATION POLYMORPHISM (RSSCP) - COMPARISON WITH DNA-SSCP
    SARKAR, G
    YOON, HS
    SOMMER, SS
    NUCLEIC ACIDS RESEARCH, 1992, 20 (04) : 871 - 878